TCONS_00044973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044973
Unique NameTCONS_00044973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044973 ID=TCONS_00044973|Name=TCONS_00044973|organism=Clytia hemisphaerica|type=transcript|length=838bp
ATTTGGCTTAATCGGCGCCACATGTTCAttaatatattttcaaagttgTC
GACAATAACGAAATCCCAATTCGATCTTTTCCGTGTTTTGTagtttcttt
gtatttattttctcGCTCATAATAGGAAACATCTTTTATAACGTGAGTAA
TAAAAGATTCAATTTAAATAGACATATAATCCTATAAAAACATCTTGTCT
AAGACTTTCAATAGGAATAATAAGCTTTTTGTGACATGAAAACAATAGGG
ATAAAATTGTTGCGTGATAACAGACAACTTCGCGGTTTGTTTACTAAGCA
TGAAAGCCAACTCGGGGCGAACTTATCTTTCTATTCTACGGGGCGCTGTC
CACTTTACGCTCCCTGGCTTTAATTCTGATAGCAGTTGGAGACCACTGCT
AAACTCTTGTTGCTTTTCCTATCTTGTCTGGTCTGGTTTGGTTTTCTTCT
GCTTTTCCTACAATCATGGCTCATCTTTCTTTAGGGTTGTCCCTACTATG
AGTTATTCTCCTGTTgcaaatcaaaatttgattggaAAAAAGGTTTAGTC
TGCAACACACATTCACCTAAATAACACTTTTGGGAGAAACTTGGTTTCAG
AAAtggttttatttaaaaagaacttatagcttttcatgtttttcaaagaa
gaatatggttcaaatcaaaacagtaattatttttagttttgtcaAGTTTT
GTAAAATTCATTTTGATCACCTAAAGAATTTTTGCAAACACTTTTAAGAT
taaagaaaaaaagcttaatttgATTTAGTATTTAACTAGAATGTCTACTC
CTGCACAGAGACTCGATTTCTTTGGAGcctcttcttat
Run BLAST on NCBI

transcript from alignment at sc0006577:134..1698-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044973 ID=TCONS_00044973|Name=TCONS_00044973|organism=Clytia hemisphaerica|type=transcript|length=1565bp|location=Sequence derived from alignment at sc0006577:134..1698- (Clytia hemisphaerica)
ATTTGGCTTAATCGGCGCCACATGTTCATTAATATATTTTCAAAGTTGTC
GACAATAACGAAATCCCAATTCGATCTTTTCCGTGTTTTGTAGTTTCTTT
GTATTTATTTTCTCGCTCATAATAGGAAACATCTTTTATAACGTGAGTAA
TAAAAGATTCAATTTAAATAGACATATAATCCTATAAAAACATCTTGTCT
AAGACTTTCAATAGGAATAATAAGCTTTTTGTGACATGAAAACAATAGGG
ATAAAATTGTTGCGTGATAACAGACAACTTCGCGGTTTGTTTACTAAGCA
TGAAAGCCAACTCGGGGCGAACTTATCTTTCTATTCTACGGGGCGCTGTC
CACTTTACGCTCCCTGGCTTTAATTCTGATAGCAGTTGGAGACCACTGCT
AAACTCTTGTTGCTTTTCCTATCTTGTCTGGTCTGGTTTGGTTTTCTTCT
GCTTTTCCTACAATCATGGCTCATCTTTCTTTAGGGTTGTCCCTACTATG
AGTTATTCTCCTGTTGCAAATCAAAATTTGATTGGAAAAAAGGTACGTTA
CTTTTCATGTTGTTTTTTTCTATCGTGCTAAATATTTACAATGTATGTGA
AAACACGTGTGTGTATTTTTTTGTTGTAAAATTGATTTTGTTTTGATTTT
TTTTCTCTTGTTTGCATCTTCAAGATGTTATGAAAAAAGTGTTAGATGTC
TGTCTCTAGTCTGTGTTTGGAGTAAAAGCCTCCTAAAATAGGAGTTCAGT
ATGAAAAAAAAANNNNNNNNNNNNNNNTTTATTTACTTGAAAATCAATCA
GAGTATAACATTTCATTGGCAAGTAATTTTCAAAGTATATCATCTTTCCT
ATATTCACTTTAAGACTGACAGCTGCACAAACTGCTTCTTTGAGAAAACG
AGCCCATCCCACTTTTTGCTTTACGTTTTTGAGCTACCATTTTTTTTGTT
TTGTTTACAAAATCTCTTGTTTCATAGAAAGCTTTCACAGCATGAGATGT
ACATAAGAAGGTTCTCTATTACAAATTCCATTAATATAATTTCTATAAAA
CTAAACTTTGTTTTGATATGTTAAGGCTGCAGCCTTGAGTAAATTTTGCA
TTACATCAAAATAATTTCAATCTTTGTTGTGAACTATGGATTTGTAATTA
ACTTAATAAACAAACAAGTTTATCACTAAACTGAAACATGTTTGTGTGTT
TTGAATTGAAAAAAAATTGAACATAATACAAACAGTAAACACACTGTCTG
AATATTTTGCTCTCTTCAGGTTTAGTCTGCAACACACATTCACCTAAATA
ACACTTTTGGGAGAAACTTGGTTTCAGAAATGGTTTTATTTAAAAAGAAC
TTATAGCTTTTCATGTTTTTCAAAGAAGAATATGGTTCAAATCAAAACAG
TAATTATTTTTAGTTTTGTCAAGTTTTGTAAAATTCATTTTGATCACCTA
AAGAATTTTTGCAAACACTTTTAAGATTAAAGAAAAAAAGCTTAATTTGA
TTTAGTATTTAACTAGAATGTCTACTCCTGCACAGAGACTCGATTTCTTT
GGAGCCTCTTCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028564XLOC_028564Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044973-exon-sc0006577-1575043694:1157..1698TCONS_00044973-exon-sc0006577-1575043694:1157..1698Clytia hemisphaericaexon
TCONS_00044973-exon-sc0006577-1575043694:134..429TCONS_00044973-exon-sc0006577-1575043694:134..429Clytia hemisphaericaexon
TCONS_00044973-exon-sc0006577-1510915933:1157..1698TCONS_00044973-exon-sc0006577-1510915933:1157..1698Clytia hemisphaericaexon
TCONS_00044973-exon-sc0006577-1510915933:134..429TCONS_00044973-exon-sc0006577-1510915933:134..429Clytia hemisphaericaexon
TCONS_00044973-exon-sc0006577-1491911889:1157..1698TCONS_00044973-exon-sc0006577-1491911889:1157..1698Clytia hemisphaericaexon
TCONS_00044973-exon-sc0006577-1491911889:134..429TCONS_00044973-exon-sc0006577-1491911889:134..429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006577supercontigsc0006577:134..1698 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03052	2.75011	6.83332	8.93461	18.3312	15.6276	28.0635	33.9441	51.2849	52.1621	46.0582	48.3829	57.0184	45.3846	31.4512	40.523	36.5833	56.4621	54.5618	54.2089	83.8188	74.8518	34.2756	50.0936	23.2542	25.0235	28.9253	26	13.898	16.7111
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top