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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044970 ID=TCONS_00044970|Name=TCONS_00044970|organism=Clytia hemisphaerica|type=transcript|length=962bp
TTCTGATGAATACAGCAAATGAATTCCCACCAGATGACGGATACGATCGT
GTGAAAAGTCAATCTGATGGATATTCGCTGGTCAGAAGCATCTCTTACGG
AGGCTACAAACATGTAGGAACGCAAGGTGAAACGACATTAAAAACACAGA
ACGATGAAGATGAAGATCAATACCCTTATTGTCATGCGCGCGAGTTCGAA
CCGAACGTTCTTCCACCGCCGACGTACGAACGCGAACCATATTTTTGTGG
AAACATAAACAAAGCAGTTAGTGAACGATTATTGAGTGGGACGGATGAAG
GAACATTTCTTATTCGAAAAAGTCAAACTCAGGCTGGAATGTTGACCCTC
TCGTTTAAGGGACTCACAAAAATTTCACATTGTCGCATCGAAATGAAACC
AAATACGGTCATTCTAGGTGAAAGTCGCTCTTTTCCATCGATTCAAGAAC
TCGTACAAACATTTAGCAAAGAACCGATGGTTTCAGAAAACGGTGAAAAG
TGTTTACTAACATCGCCAATATGTATGGTGTGATGATTCTTCTCGTCAAG
ACGAATTAAAGGgaattatgtttaaaaaaaagctaaaagatCAAATCACT
GTGATATCGCTTATTGGGTGAATTTAGAATAGCAAAGCTGCGATTATATT
ACAAAGAAATTCCACCTTTTCACCGTGAAATTACCCAAAAGACTCGATAG
gtaatagttatcgcacggtactgagtacaatatgggatatatatttcgag
ttcagatttttcgtaATATTTCGtaaaatatagaaaactttgaacgaaaa
aagtttgtagctatttttcatgttgacgatAAATCATAATATAAGTGATT
TTGAACGTTAATGCAAATGTGTTTCTAAATTTGTCCATTTTGTTTACCTT
GTTGCACCTGAATGAATGAGTGTATATAGCACGTATAACttttttatatc
catacaggggac Run BLAST on NCBI protein sequence of TCONS_00044970-protein >TCONS_00044970-protein ID=TCONS_00044970-protein|Name=TCONS_00044970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
LMNTANEFPPDDGYDRVKSQSDGYSLVRSISYGGYKHVGTQGETTLKTQN
DEDEDQYPYCHAREFEPNVLPPPTYEREPYFCGNINKAVSERLLSGTDEG
TFLIRKSQTQAGMLTLSFKGLTKISHCRIEMKPNTVILGESRSFPSIQEL
VQTFSKEPMVSENGEKCLLTSPICMV Run BLAST on NCBI transcript from alignment at sc0006575:2..1709- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044970 ID=TCONS_00044970|Name=TCONS_00044970|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at sc0006575:2..1709- (Clytia hemisphaerica)
TTCTGATGAATACAGCAAATGAATTCCCACCAGATGACGGATACGATCGT
GTGAAAAGTCAATCTGATGGATATTCGCTGGTCAGAAGCATCTCTTACGG
AGGCTACAAACATGTAGGAACGCAAGGTGAAACGACATTAAAAACACAGA
ACGATGAAGATGAAGATCAATACCCTTATTGTCATGCGCGCGAGTTCGAA
CCGAACGTTCTTCCACCGCCGACGTACGAACGCGAACCATATTTTTGTGG
AAACATAAACAAAGCAGTTAGTGAACGATTATTGAGTGGGACGGATGAAG
GAACATTTCTTATTCGAAAAAGTCAAACTCAGGTAAATAGAATTTCAACA
AATTGTCTCTTACCCGCCCTATATCCACAACTGACTGATGATTTATCCAT
GTCGCTCACTCAGACAAAATGGCGTTACACGAATATGCACGTCCCGCTTT
TTAAGGCTCTGTAAAAATCTGATAAGGTCGCAAATTCATAGCTCGGGGTC
CACTTAAGCATTTTTATAAACTGGGAAGCTGGATTCTCAATATTTTTAGC
TTTTAGTCAGGCGAACTGTATAGGTCCGCCAGATTCTAGTTGATTTTGGA
AGGTAAAAAATGGATTGTGCAATATTTTTTATTTAAAAGTAGGTTTTCAA
ATCTGATAACTCTAAGGCTCTAAGTAGCTTTTTATTTAGATCGGTATGTG
ATTTGGATTTTCTGTATCTTTCTTCAAATTTGCGACCTCGTCAAAGTTCA
ACCAGTAGATTCTAGTCTAGAAAAAAATTACTAGTTTTATTACTAGTAAT
TTTAGTTGACATTGGGCTTTTCCAGAAAAAATTTGAATAAGGGGGAGGGA
GGATGTAACATTTTTATGTAATTTACCTCCCCCCTCCGACATTGTGGCTT
TTGACCCCCCGGAAAAGCATCAATTGACCCCCTGGATATTCAATATTACC
CCCAAGTCAGAGCAAGTTTACCCCCCGGACAAGGCAAATTTTGTAGATTT
TTCACTACCCCCGGACATACATTTGCTGGAAGAGCCCATTATCTTTTATT
CTAAAGTGTGCGCATTTTCACATTTTAGGCTGGAATGTTGACCCTCTCGT
TTAAGGGACTCACAAAAATTTCACATTGTCGCATCGAAATGAAACCAAAT
ACGGTCATTCTAGGTGAAAGTCGCTCTTTTCCATCGATTCAAGAACTCGT
ACAAACATTTAGCAAAGAACCGATGGTTTCAGAAAACGGTGAAAAGTGTT
TACTAACATCGCCAATATGTATGGTGTGATGATTCTTCTCGTCAAGACGA
ATTAAAGGGAATTATGTTTAAAAAAAAGCTAAAAGATCAAATCACTGTGA
TATCGCTTATTGGGTGAATTTAGAATAGCAAAGCTGCGATTATATTACAA
AGAAATTCCACCTTTTCACCGTGAAATTACCCAAAAGACTCGATAGGTAA
TAGTTATCGCACGGTACTGAGTACAATATGGGATATATATTTCGAGTTCA
GATTTTTCGTAATATTTCGTAAAATATAGAAAACTTTGAACGAAAAAAGT
TTGTAGCTATTTTTCATGTTGACGATAAATCATAATATAAGTGATTTTGA
ACGTTAATGCAAATGTGTTTCTAAATTTGTCCATTTTGTTTACCTTGTTG
CACCTGAATGAATGAGTGTATATAGCACGTATAACTTTTTTATATCCATA
CAGGGGAC Coding sequence (CDS) from alignment at sc0006575:2..1709- >TCONS_00044970 ID=TCONS_00044970|Name=TCONS_00044970|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0006575:2..1709- (Clytia hemisphaerica)
GCTGGAATGTTGACCCTCTCGTTTAAGGGACTCACAAAAATTTCACATTG
TCGCATCGAAATGAAACCAAATACGGTCATTCTAGGTGAAAGTCGCTCTT
TTCCATCGATTCAAGAACTCGTACAAACATTTAGCAAAGAACCGATGGTT
TCAGAAAACGGTGAAAAGTGTTTACTAACATCGCCAATATGTATGGTGTG
ACTGATGAATACAGCAAATGAATTCCCACCAGATGACGGATACGATCGTG
TGAAAAGTCAATCTGATGGATATTCGCTGGTCAGAAGCATCTCTTACGGA
GGCTACAAACATGTAGGAACGCAAGGTGAAACGACATTAAAAACACAGAA
CGATGAAGATGAAGATCAATACCCTTATTGTCATGCGCGCGAGTTCGAAC
CGAACGTTCTTCCACCGCCGACGTACGAACGCGAACCATATTTTTGTGGA
AACATAAACAAAGCAGTTAGTGAACGATTATTGAGTGGGACGGATGAAGG
AACATTTCTTATTCGAAAAAGTCAAACTCAGGCTGGAATGTTGACCCTCT
CGTTTAAGGGACTCACAAAAATTTCACATTGTCGCATCGAAATGAAACCA
AATACGGTCATTCTAGGTGAAAGTCGCTCTTTTCCATCGATTCAAGAACT
CGTACAAACATTTAGCAAAGAACCGATGGTTTCAGAAAACGGTGAAAAGT
GTTTACTAACATCGCCAATATGTATGGTGTGACTGATGAATACAGCAAAT
GAATTCCCACCAGATGACGGATACGATCGTGTGAAAAGTCAATCTGATGG
ATATTCGCTGGTCAGAAGCATCTCTTACGGAGGCTACAAACATGTAGGAA
CGCAAGGTGAAACGACATTAAAAACACAGAACGATGAAGATGAAGATCAA
TACCCTTATTGTCATGCGCGCGAGTTCGAACCGAACGTTCTTCCACCGCC
GACGTACGAACGCGAACCATATTTTTGTGGAAACATAAACAAAGCAGTTA
GTGAACGATTATTGAGTGGGACGGATGAAGGAACATTTCTTATTCGAAAA
AGTCAAACTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044970-exon-sc0006575-1575043694:1378..1709 | TCONS_00044970-exon-sc0006575-1575043694:1378..1709 | Clytia hemisphaerica | exon |
| TCONS_00044970-exon-sc0006575-1575043694:2..631 | TCONS_00044970-exon-sc0006575-1575043694:2..631 | Clytia hemisphaerica | exon |
| TCONS_00044970-exon-sc0006575-1510915933:1378..1709 | TCONS_00044970-exon-sc0006575-1510915933:1378..1709 | Clytia hemisphaerica | exon |
| TCONS_00044970-exon-sc0006575-1510915933:2..631 | TCONS_00044970-exon-sc0006575-1510915933:2..631 | Clytia hemisphaerica | exon |
| TCONS_00044970-exon-sc0006575-1491911889:1378..1709 | TCONS_00044970-exon-sc0006575-1491911889:1378..1709 | Clytia hemisphaerica | exon |
| TCONS_00044970-exon-sc0006575-1491911889:2..631 | TCONS_00044970-exon-sc0006575-1491911889:2..631 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006575 | supercontig | sc0006575:2..1709 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000980 | SH2 |
Blast
The following BLAST results are available for this feature:
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