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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044965 ID=TCONS_00044965|Name=TCONS_00044965|organism=Clytia hemisphaerica|type=transcript|length=1012bp
GCTCCACTTTTGGAAATCCTTCTCGcgatttttatttaattctttaaacc
catcattgttttgttttcttaaaTATTTAAATCCCCCTTCACACGTTGCA
TTCAACTGCTTTAAATCATTATCACATTGTTTTCTCCATATAGCAGCATC
CTCTCCACCCATAATTACCGTATGATAATACTCAATATCATCGCTGACGA
TTGGAACTAACGTCTTGACGTCAGCACGAAAAATCATCTCTAattccatt
ttcattttgtcaaatttttcatcaTCAAGAAAAGCATTCCGTTTTAAGCA
TTGTAAACATTCAGTTGTACGTTCTTTAACAAACGCCCATAAGTCATCCC
ATTTTTGCGTTTGAGGAAAAGCTTGCAGCACATGGGTTCCATTTTCAAGA
TCAATAAAANCGTTTGAGGAAAAGCTTGCAGCACATGGGTTCCATTTTCA
AGATCAATAAAACAAGTTTTGTTTTCAGACAAATGTTTAATACAGTTTCT
CAAGGATTCGGCAATATCCACTAACCACAACAAAGCCGTGTAATCACATT
TGTAGGGGTATTGTGAGCATTTTTTGTACCCACAATTAATTTTGCCAACA
CAATCTCCTTTGGGAATATTACAGATGCAATTTTGGTGCTCATTTTCACA
ATTACCACAGCATTGAAACACTTGTCGAAGTGATTTTGAGATGAATTTCA
AGTTGAAAACTTTTGTTAATAGCAAAATATCAAGTTGCTTGTAGTCAATG
CTttgtttcaaattgttttgtGCATCATAAAAGTGTTTCTTATGgtgatg
ttcttttaaaaatttcttgtttttgaattgttgaaaatttgctgtAATGA
CTTCCTGGAAACCGATTTTTAGGTCACCCTTGTTTTGACAGTTGCGGTGA
TGTGATATTGCAAACTCAAAAATGACAACCTGTGTTTCGTGAAGAATTTT
CAGCAAATGTTTGGTTCGAATATCTAAATGATGCAAAACCATGCCTTACa
gcatttcttaaa Run BLAST on NCBI protein sequence of TCONS_00044965-protein >TCONS_00044965-protein ID=TCONS_00044965-protein|Name=TCONS_00044965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MVLHHLDIRTKHLLKILHETQVVIFEFAISHHRNCQNKGDLKIGFQEVIT
ANFQQFKNKKFLKEHHHKKHFYDAQNNLKQSIDYKQLDILLLTKVFNLKF
ISKSLRQVFQCCGNCENEHQNCICNIPKGDCVGKINCGYKKCSQYPYKCD
YTALLWLVDIAESLRNCIKHLSENKTCFIDLENGTHVLQAFPQTXLLILK
MEPMCCKLFLKRKNGMTYGRLLKNVQLNVYNA Run BLAST on NCBI transcript from alignment at sc0006558:702..1713 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044965 ID=TCONS_00044965|Name=TCONS_00044965|organism=Clytia hemisphaerica|type=transcript|length=1012bp|location=Sequence derived from alignment at sc0006558:702..1713 (Clytia hemisphaerica)
tttaagaaatgctGTAAGGCATGGTTTTGCATCATTTAGATATTCGAACC
AAACATTTGCTGAAAATTCTTCACGAAACACAGGTTGTCATTTTTGAGTT
TGCAATATCACATCACCGCAACTGTCAAAACAAGGGTGACCTAAAAATCG
GTTTCCAGGAAGTCATTacagcaaattttcaacaattcaaaaacaagaaa
tttttaaaagaacatcacCATAAGAAACACTTTTATGATGCacaaaacaa
tttgaaacaaAGCATTGACTACAAGCAACTTGATATTTTGCTATTAACAA
AAGTTTTCAACTTGAAATTCATCTCAAAATCACTTCGACAAGTGTTTCAA
TGCTGTGGTAATTGTGAAAATGAGCACCAAAATTGCATCTGTAATATTCC
CAAAGGAGATTGTGTTGGCAAAATTAATTGTGGGTACAAAAAATGCTCAC
AATACCCCTACAAATGTGATTACACGGCTTTGTTGTGGTTAGTGGATATT
GCCGAATCCTTGAGAAACTGTATTAAACATTTGTCTGAAAACAAAACTTG
TTTTATTGATCTTGAAAATGGAACCCATGTGCTGCAAGCTTTTCCTCAAA
CGNTTTTATTGATCTTGAAAATGGAACCCATGTGCTGCAAGCTTTTCCTC
AAACGCAAAAATGGGATGACTTATGGGCGTTTGTTAAAGAACGTACAACT
GAATGTTTACAATGCTTAAAACGGAATGCTTTTCTTGAtgatgaaaaatt
tgacaaaatgaaaatggaatTAGAGATGATTTTTCGTGCTGACGTCAAGA
CGTTAGTTCCAATCGTCAGCGATGATATTGAGTATTATCATACGGTAATT
ATGGGTGGAGAGGATGCTGCTATATGGAGAAAACAATGTGATAATGATTT
AAAGCAGTTGAATGCAACGTGTGAAGGGGGATTTAAATAtttaagaaaac
aaaacaatgatgggtttaaagaattaaataaaaatcgCGAGAAGGATTTC
CAAAAGTGGAGC Coding sequence (CDS) from alignment at sc0006558:702..1713 >TCONS_00044965 ID=TCONS_00044965|Name=TCONS_00044965|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0006558:702..1713 (Clytia hemisphaerica)
ATGGTTTTGCATCATTTAGATATTCGAACCAAACATTTGCTGAAAATTCT
TCACGAAACACAGGTTGTCATTTTTGAGTTTGCAATATCACATCACCGCA
ACTGTCAAAACAAGGGTGACCTAAAAATCGGTTTCCAGGAAGTCATTaca
gcaaattttcaacaattcaaaaacaagaaatttttaaaagaacatcacCA
TAAGAAACACTTTTATGATGCacaaaacaatttgaaacaaAGCATTGACT
ACAAGCAACTTGATATTTTGCTATTAACAAAAGTTTTCAACTTGAAATTC
ATCTCAAAATCACTTCGACAAGTGTTTCAATGCTGTGGTAATTGTGAAAA
TGAGCACCAAAATTGCATCTGTAATATTCCCAAAGGAGATTGTGTTGGCA
AAATTAATTGTGGGTACAAAAAATGCTCACAATACCCCTACAAATGTGAT
TACACGGCTTTGTTGTGGTTAGTGGATATTGCCGAATCCTTGAGAAACTG
TATTAAACATTTGTCTGAAAACAAAACTTGTTTTATTGATCTTGAAAATG
GAACCCATGTGCTGCAAGCTTTTCCTCAAACGNTTTTATTGATCTTGAAA
ATGGAACCCATGTGCTGCAAGCTTTTCCTCAAACGCAAAAATGGGATGAC
TTATGGGCGTTTGTTAAAGAACGTACAACTGAATGTTTACAATGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044965-exon-sc0006558-1491911889:702..1713 | TCONS_00044965-exon-sc0006558-1491911889:702..1713 | Clytia hemisphaerica | exon |
| TCONS_00044965-exon-sc0006558-1510915933:702..1713 | TCONS_00044965-exon-sc0006558-1510915933:702..1713 | Clytia hemisphaerica | exon |
| TCONS_00044965-exon-sc0006558-1575043694:702..1713 | TCONS_00044965-exon-sc0006558-1575043694:702..1713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006558 | supercontig | sc0006558:702..1713 . |
Blast
The following BLAST results are available for this feature:
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