TCONS_00044953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044953
Unique NameTCONS_00044953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044953 ID=TCONS_00044953|Name=TCONS_00044953|organism=Clytia hemisphaerica|type=transcript|length=633bp
ATTAGTTCACAGGATGTGAATAATACTATTTTCAAGTTGACTGGATTAAG
ATTGTGTGACACATCAGATGACGTGGAATTCGTTTACCAACCATGGGGAT
ATGGCGAATGGATAGACGTTGGAGATATTAGTAGTTCATTGGCTTTGATT
GATCACAAACGAAAGGAGATCCAGTTTCAATTTCGACGTCTATGGTCAGG
GCAACTCTTGAAAATTGGCATCAAATGTTATAAGAAAGATGGTAGTAAGC
GAGTTCTTTTGCCAGCGTCTTGTGCTGTGGTCAAACATGAAGGCTCGACT
ACATTACCTATAAAGAAATCAATGTTCGGGATGGGACCAGACCCTCCAAC
AACgacaacaaccacaacaacaacatcaaCTACGACAACCACCACAACTA
CGACTACGACAACCGAATCTTCCTCTTCCACTAGTAAGGCTCCAGGAACG
ACAGATGTTAGGGAAACGACAAACCTACCGACAACGACGACTAAGCCTCC
CGACTTTATCCACCGATCAGCATCGGGAGATTATTGCACTAACGATGAAT
GTAATTGTAGGAAGAATCAGGGAACATATCTCAACAACCTTGGCAATAAA
GATAGATGTGTTAGTTCGTATACCAAGCAATTT
Run BLAST on NCBI

protein sequence of TCONS_00044953-protein

>TCONS_00044953-protein ID=TCONS_00044953-protein|Name=TCONS_00044953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
ISSQDVNNTIFKLTGLRLCDTSDDVEFVYQPWGYGEWIDVGDISSSLALI
DHKRKEIQFQFRRLWSGQLLKIGIKCYKKDGSKRVLLPASCAVVKHEGST
TLPIKKSMFGMGPDPPTTTTTTTTTSTTTTTTTTTTTTESSSSTSKAPGT
TDVRETTNLPTTTTKPPDFIHRSASGDYCTNDECNCRKNQGTYLNNLGNK
DRCVSSYTKQF
Run BLAST on NCBI

transcript from alignment at sc0006523:172..1783-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044953 ID=TCONS_00044953|Name=TCONS_00044953|organism=Clytia hemisphaerica|type=transcript|length=1612bp|location=Sequence derived from alignment at sc0006523:172..1783- (Clytia hemisphaerica)
ATTAGTTCACAGGATGTGAATAATACTATTTTCAAGTTGACTGGATTAAG
ATTGTGTGACACATCAGATGACGTGGAATTCGTTTACCAACCATGGGGAT
ATGGCGAATGGATAGACGTTGGAGATATTAGTAGTTCATTGGCTTTGATT
GATCACAAACGAAAGGTTTGTTGATTTTAATTAGATAATGACTTTCAAAA
AAAATTCAATTGTTGATCACTTAGCAGATACCTCTTTTTTGACGATATTC
AAATGTGGATCAATTTACGCAAATTACGCGAGTTTTTCCGAAAATTCGAG
AAATTTAATGAAAATCAAAGAAATTAATTGAAAAAGGGACCTCAAATTTT
AATAAACGGTAGAGCCTAATGACCGGGGGTTTATTAGACACCTGAGAGTA
TTAAGCTTTATACAATCTGTCTTTTAAATACCTTTGAGATACCACGGATA
ACTTATTCTACGGTTCTTGATTTTACAACAGGAGATCCAGTTTCAATTTC
GACGTCTATGGTCAGGGCAACTCTTGAAAATTGGCATCAAATGTTATAAG
AAAGATGGTAGTAAGCGAGTTCTTTTGCCAGCGTCTTGTGCTGTGGTCAA
ACATGAAGGCTCGACTACATGTAAGTCCTTTTTACGTAGAATCCTGAAAC
AACGAATTTTTGTACCTTCTCTGAAGGGATAAGCTCTAAAAAAGAAACCT
GGAATCGGCTGTTGAAGAAATTTAAATTTCTATACCATACACACTTGAGA
ATTTGCATAATTGGGCAAAGGTAGTCTAAATAGATTACGACGCCCCTCAA
AATAACATCACAAATGATGACACACTTAAGAATTCGCATAATCGTAAACC
GCTACTTAATTTTTGTTTTCTACACGATTTCACATTGTTAAATCAGCATT
TATTCCATTTAGATTTCATTGAATTCTAAAGCATTCCCCTTTAGCTCTTT
GTAACTCAAATAGTCACTCGAATCCCTATCAGCATTGAGCTGTGGAGAAT
GGGCTGTAATTACAAGGTTCTGACTATACCTCCTACCTTCCTCTTTTAAG
TACACAGATAGAATTTAATAATGTAAGATTACTCGATATCACATGGCTTT
GAAAATTCGATTATTTCTTAATTTAAAAATTGGCTTTGTCCTGTCATATG
ACACTTAAATTAAAGTATTCATCGAAAATTTTAATTTTTAATAGATTTAA
CTGAAAAGTGCATGAAACTTGAATGGGATTTTGCTAAACTCATCAAGTCA
CTAAGTATAAATATTTGTTCAATTTCTTTGCAGTACCTATAAAGAAATCA
ATGTTCGGGATGGGACCAGACCCTCCAACAACGACAACAACCACAACAAC
AACATCAACTACGACAACCACCACAACTACGACTACGACAACCGAATCTT
CCTCTTCCACTAGTAAGGCTCCAGGAACGACAGATGTTAGGGAAACGACA
AACCTACCGACAACGACGACTAAGCCTCCCGACTTTATCCACCGATCAGC
ATCGGGAGATTATTGCACTAACGATGAATGTAATTGTAGGAAGAATCAGG
GAACATATCTCAACAACCTTGGCAATAAAGATAGATGTGTTAGTTCGTAT
ACCAAGCAATTT

Coding sequence (CDS) from alignment at sc0006523:172..1783-

>TCONS_00044953 ID=TCONS_00044953|Name=TCONS_00044953|organism=Clytia hemisphaerica|type=CDS|length=1899bp|location=Sequence derived from alignment at sc0006523:172..1783- (Clytia hemisphaerica)
TACCTATAAAGAAATCAATGTTCGGGATGGGACCAGACCCTCCAACAACG
ACAACAACCACAACAACAACATCAACTACGACAACCACCACAACTACGAC
TACGACAACCGAATCTTCCTCTTCCACTAGTAAGGCTCCAGGAACGACAG
ATGTTAGGGAAACGACAAACCTACCGACAACGACGACTAAGCCTCCCGAC
TTTATCCACCGATCAGCATCGGGAGATTATTGCACTAACGATGAATGTAA
TTGTAGGAAGAATCAGGGAACATATCTCAACAACCTTGGCAATAAAGATA
GATGTGTTAGTTCGTATACCAAGCAATTTGAGATCCAGTTTCAATTTCGA
CGTCTATGGTCAGGGCAACTCTTGAAAATTGGCATCAAATGTTATAAGAA
AGATGGTAGTAAGCGAGTTCTTTTGCCAGCGTCTTGTGCTGTGGTCAAAC
ATGAAGGCTCGACTACATATTAGTTCACAGGATGTGAATAATACTATTTT
CAAGTTGACTGGATTAAGATTGTGTGACACATCAGATGACGTGGAATTCG
TTTACCAACCATGGGGATATGGCGAATGGATAGACGTTGGAGATATTAGT
AGTTCATTGGCTTTGATTGATCACAAACGAAAGTACCTATAAAGAAATCA
ATGTTCGGGATGGGACCAGACCCTCCAACAACGACAACAACCACAACAAC
AACATCAACTACGACAACCACCACAACTACGACTACGACAACCGAATCTT
CCTCTTCCACTAGTAAGGCTCCAGGAACGACAGATGTTAGGGAAACGACA
AACCTACCGACAACGACGACTAAGCCTCCCGACTTTATCCACCGATCAGC
ATCGGGAGATTATTGCACTAACGATGAATGTAATTGTAGGAAGAATCAGG
GAACATATCTCAACAACCTTGGCAATAAAGATAGATGTGTTAGTTCGTAT
ACCAAGCAATTTGAGATCCAGTTTCAATTTCGACGTCTATGGTCAGGGCA
ACTCTTGAAAATTGGCATCAAATGTTATAAGAAAGATGGTAGTAAGCGAG
TTCTTTTGCCAGCGTCTTGTGCTGTGGTCAAACATGAAGGCTCGACTACA
TATTAGTTCACAGGATGTGAATAATACTATTTTCAAGTTGACTGGATTAA
GATTGTGTGACACATCAGATGACGTGGAATTCGTTTACCAACCATGGGGA
TATGGCGAATGGATAGACGTTGGAGATATTAGTAGTTCATTGGCTTTGAT
TGATCACAAACGAAAGTACCTATAAAGAAATCAATGTTCGGGATGGGACC
AGACCCTCCAACAACGACAACAACCACAACAACAACATCAACTACGACAA
CCACCACAACTACGACTACGACAACCGAATCTTCCTCTTCCACTAGTAAG
GCTCCAGGAACGACAGATGTTAGGGAAACGACAAACCTACCGACAACGAC
GACTAAGCCTCCCGACTTTATCCACCGATCAGCATCGGGAGATTATTGCA
CTAACGATGAATGTAATTGTAGGAAGAATCAGGGAACATATCTCAACAAC
CTTGGCAATAAAGATAGATGTGTTAGTTCGTATACCAAGCAATTTGAGAT
CCAGTTTCAATTTCGACGTCTATGGTCAGGGCAACTCTTGAAAATTGGCA
TCAAATGTTATAAGAAAGATGGTAGTAAGCGAGTTCTTTTGCCAGCGTCT
TGTGCTGTGGTCAAACATGAAGGCTCGACTACATATTAGTTCACAGGATG
TGAATAATACTATTTTCAAGTTGACTGGATTAAGATTGTGTGACACATCA
GATGACGTGGAATTCGTTTACCAACCATGGGGATATGGCGAATGGATAGA
CGTTGGAGATATTAGTAGTTCATTGGCTTTGATTGATCACAAACGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028544XLOC_028544Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044953-proteinTCONS_00044953-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044953-exon-sc0006523-1575043694:1619..1783TCONS_00044953-exon-sc0006523-1575043694:1619..1783Clytia hemisphaericaexon
TCONS_00044953-exon-sc0006523-1575043694:1164..1302TCONS_00044953-exon-sc0006523-1575043694:1164..1302Clytia hemisphaericaexon
TCONS_00044953-exon-sc0006523-1575043694:172..500TCONS_00044953-exon-sc0006523-1575043694:172..500Clytia hemisphaericaexon
TCONS_00044953-exon-sc0006523-1510915933:1619..1783TCONS_00044953-exon-sc0006523-1510915933:1619..1783Clytia hemisphaericaexon
TCONS_00044953-exon-sc0006523-1510915933:1164..1302TCONS_00044953-exon-sc0006523-1510915933:1164..1302Clytia hemisphaericaexon
TCONS_00044953-exon-sc0006523-1510915933:172..500TCONS_00044953-exon-sc0006523-1510915933:172..500Clytia hemisphaericaexon
TCONS_00044953-exon-sc0006523-1491911889:1619..1783TCONS_00044953-exon-sc0006523-1491911889:1619..1783Clytia hemisphaericaexon
TCONS_00044953-exon-sc0006523-1491911889:1164..1302TCONS_00044953-exon-sc0006523-1491911889:1164..1302Clytia hemisphaericaexon
TCONS_00044953-exon-sc0006523-1491911889:172..500TCONS_00044953-exon-sc0006523-1491911889:172..500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006523supercontigsc0006523:172..1783 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167348	0.244786	0	0	0.677034	0.356667	0	0	0	0	0	0.111453	5.7171	7.81085	0	0.101977	1.94266	2.71376	13.4625	12.5913	6.04954	4.62171	2.23348	2.27795	7.80289	8.68494	1.04545	0.542422	0.464358	0.712324
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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