TCONS_00044949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044949
Unique NameTCONS_00044949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044949 ID=TCONS_00044949|Name=TCONS_00044949|organism=Clytia hemisphaerica|type=transcript|length=257bp
GACGATTTAGGATATTTTGAGATTCAATGAATTTAAGCTGCATTAGGATA
AGCGATTACATCAATTGTAATAATTCCAAAATAGAAATATACATCCACTT
ATACCACTATTCAACGTTTCCATAATTATCCTTATAATATCAACCAAATT
GCATATGGATGAATCAATTCACTTGCAATGCACttccatattttttcatt
ccataTTTTTCCATATTGTCTATTTTTTAAACTCTGTGAcagtctttttt
atttttg
Run BLAST on NCBI

transcript from alignment at sc0006519:1505..1761

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044949 ID=TCONS_00044949|Name=TCONS_00044949|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at sc0006519:1505..1761 (Clytia hemisphaerica)
caaaaataaaaaagactgTCACAGAGTTTAAAAAATAGACAATATGGAAA
AAtatggaatgaaaaaatatggaaGTGCATTGCAAGTGAATTGATTCATC
CATATGCAATTTGGTTGATATTATAAGGATAATTATGGAAACGTTGAATA
GTGGTATAAGTGGATGTATATTTCTATTTTGGAATTATTACAATTGATGT
AATCGCTTATCCTAATGCAGCTTAAATTCATTGAATCTCAAAATATCCTA
AATCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028540XLOC_028540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044949-exon-sc0006519-1491911889:1505..1761TCONS_00044949-exon-sc0006519-1491911889:1505..1761Clytia hemisphaericaexon
TCONS_00044949-exon-sc0006519-1510915933:1505..1761TCONS_00044949-exon-sc0006519-1510915933:1505..1761Clytia hemisphaericaexon
TCONS_00044949-exon-sc0006519-1575043694:1505..1761TCONS_00044949-exon-sc0006519-1575043694:1505..1761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006519supercontigsc0006519:1505..1761 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.47665	5.01921	1.73148	0	9.6838	2.97557	4.96033	2.31737	6.95362	6.96957	2.47183	5.95476	6.32819	3.45807	5.01164	3.4559	1.15505	1.14839	10.9916	8.43248	19.6724	11.5058	45.1972	21.7696	0	1.97562	35.2709	22.0548	30.2963	34.1122
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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