TCONS_00044944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044944
Unique NameTCONS_00044944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044944 ID=TCONS_00044944|Name=TCONS_00044944|organism=Clytia hemisphaerica|type=transcript|length=384bp
TGTACATGGTGGGGGTGGAGGTGGACAAGGTGCCATCATGCaaggtggtg
gtggtggtggacaAGAAGGTTGGCAAATTGGTGGTGGTGGTCCTGGTGGG
GTAGCACAACAAGATTCTGAGCATGAAGGGGCACAGAGAGAAGAACAAGG
GAATTGACAAGTGACTGGTTTGGCTTGTGCTGGTGGTGCTGGAGGTGGTG
GGATATTTGGTCCTGGTAGGTATGCTGGTCGCTCTTTGAATTTCGCTGGT
CGTGGCTTGGGTGGTAGAACGTATCCAATAGGTGGTGGTGCCATAGGAGG
GTTTTCACAACATTCAGGTGTACAGCTTGGATAACATGTCGGTGCACATG
CACTACATGATGGTGCCATTTGACCTGCTTGATC
Run BLAST on NCBI

transcript from alignment at sc0006507:1288..1788-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044944 ID=TCONS_00044944|Name=TCONS_00044944|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at sc0006507:1288..1788- (Clytia hemisphaerica)
TGTACATGGTGGGGGTGGAGGTGGACAAGGTGCCATCATGCAAGGTGGTG
GTGGTGGTGGACAAGAAGGTTGACAAGTGGGCATGGGCATTGGTGGTGGT
GCTGGGGGTGCGCAAGGTGTACATGGAGGGGGAGGTGGTAGACAAGGTGC
CATCATACATGGGGGAGGAGGTGGAGGACACGAAGGTTGGCAAATTGGTG
GTGGTGGTCCTGGTGGGGTAGCACAACAAGATTCTGAGCATGAAGGGGCA
CAGAGAGAAGAACAAGGGAATTGACAAGTGACTGGTTTGGCTTGTGCTGG
TGGTGCTGGAGGTGGTGGGATATTTGGTCCTGGTAGGTATGCTGGTCGCT
CTTTGAATTTCGCTGGTCGTGGCTTGGGTGGTAGAACGTATCCAATAGGT
GGTGGTGCCATAGGAGGGTTTTCACAACATTCAGGTGTACAGCTTGGATA
ACATGTCGGTGCACATGCACTACATGATGGTGCCATTTGACCTGCTTGAT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028537XLOC_028537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044944-exon-sc0006507-1575043694:1721..1788TCONS_00044944-exon-sc0006507-1575043694:1721..1788Clytia hemisphaericaexon
TCONS_00044944-exon-sc0006507-1575043694:1288..1603TCONS_00044944-exon-sc0006507-1575043694:1288..1603Clytia hemisphaericaexon
TCONS_00044944-exon-sc0006507-1510915933:1721..1788TCONS_00044944-exon-sc0006507-1510915933:1721..1788Clytia hemisphaericaexon
TCONS_00044944-exon-sc0006507-1510915933:1288..1603TCONS_00044944-exon-sc0006507-1510915933:1288..1603Clytia hemisphaericaexon
TCONS_00044944-exon-sc0006507-1491911889:1721..1788TCONS_00044944-exon-sc0006507-1491911889:1721..1788Clytia hemisphaericaexon
TCONS_00044944-exon-sc0006507-1491911889:1288..1603TCONS_00044944-exon-sc0006507-1491911889:1288..1603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006507supercontigsc0006507:1288..1788 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.733441	0	4.81902	0	1.602	1.14436	1.42334	1.28799	1.15161	2.00648	1.00467	10.267	4.92385	1.40534	0	0	3.96852	4.87418	1.96073	2.15875	2.87121	2.13075	2.56198	0	0	0.0599684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top