TCONS_00044943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044943
Unique NameTCONS_00044943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044943 ID=TCONS_00044943|Name=TCONS_00044943|organism=Clytia hemisphaerica|type=transcript|length=384bp
TGTACATGGTGGGGGTGGAGGTGGACAAGGTGCCATCATGCaaggtggtg
gtgGTGGAGGACACGAAGGTTGGCAAATTGGTGGTGGTGGTCCTGGTGGG
GTAGCACAACAAGATTCTGAGCATGAAGGGGCACAGAGAGAAGAACAAGG
GAATTGACAAGTGACTGGTTTGGCTTGTGCTGGTGGTGCTGGAGGTGGTG
GGATATTTGGTCCTGGTAGGTATGCTGGTCGCTCTTTGAATTTCGCTGGT
CGTGGCTTGGGTGGTAGAACGTATCCAATAGGTGGTGGTGCCATAGGAGG
GTTTTCACAACATTCAGGTGTACAGCTTGGATAACATGTCGGTGCACATG
CACTACATGATGGTGCCATTTGACCTGCTTGATC
Run BLAST on NCBI

transcript from alignment at sc0006507:1288..1788-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044943 ID=TCONS_00044943|Name=TCONS_00044943|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at sc0006507:1288..1788- (Clytia hemisphaerica)
TGTACATGGTGGGGGTGGAGGTGGACAAGGTGCCATCATGCAAGGTGGTG
GTGGTGGTGGACAAGAAGGTTGACAAGTGGGCATGGGCATTGGTGGTGGT
GCTGGGGGTGCGCAAGGTGTACATGGAGGGGGAGGTGGTAGACAAGGTGC
CATCATACATGGGGGAGGAGGTGGAGGACACGAAGGTTGGCAAATTGGTG
GTGGTGGTCCTGGTGGGGTAGCACAACAAGATTCTGAGCATGAAGGGGCA
CAGAGAGAAGAACAAGGGAATTGACAAGTGACTGGTTTGGCTTGTGCTGG
TGGTGCTGGAGGTGGTGGGATATTTGGTCCTGGTAGGTATGCTGGTCGCT
CTTTGAATTTCGCTGGTCGTGGCTTGGGTGGTAGAACGTATCCAATAGGT
GGTGGTGCCATAGGAGGGTTTTCACAACATTCAGGTGTACAGCTTGGATA
ACATGTCGGTGCACATGCACTACATGATGGTGCCATTTGACCTGCTTGAT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028537XLOC_028537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044943-exon-sc0006507-1575043694:1736..1788TCONS_00044943-exon-sc0006507-1575043694:1736..1788Clytia hemisphaericaexon
TCONS_00044943-exon-sc0006507-1575043694:1288..1618TCONS_00044943-exon-sc0006507-1575043694:1288..1618Clytia hemisphaericaexon
TCONS_00044943-exon-sc0006507-1510915933:1736..1788TCONS_00044943-exon-sc0006507-1510915933:1736..1788Clytia hemisphaericaexon
TCONS_00044943-exon-sc0006507-1510915933:1288..1618TCONS_00044943-exon-sc0006507-1510915933:1288..1618Clytia hemisphaericaexon
TCONS_00044943-exon-sc0006507-1491911889:1736..1788TCONS_00044943-exon-sc0006507-1491911889:1736..1788Clytia hemisphaericaexon
TCONS_00044943-exon-sc0006507-1491911889:1288..1618TCONS_00044943-exon-sc0006507-1491911889:1288..1618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006507supercontigsc0006507:1288..1788 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.45239	0	0	1.13325	3.05612	4.02992	4.57242	4.94934	3.15413	8.50784	2.53594	5.51586	0	0	1.84664	0	0	0	2.21173	0	0	0	0	0.0599684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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