TCONS_00044939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044939
Unique NameTCONS_00044939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044939 ID=TCONS_00044939|Name=TCONS_00044939|organism=Clytia hemisphaerica|type=transcript|length=343bp
AATATATCTAGTATAAATAGCAGACATTTATTGATTGAGAACACACTTTC
AAGCAACTATCACAGGGCAAAGAAGGTAAAAAGCGTCATCATGGAGAAAA
CAATTTTCTACGTTGCTCTTTATACAACAATGGTAGCATTAGCTTACACG
CAAGTTCTGAATGAGggaGAGTGTAACAGTTCATGTAAACTCGGGCGTGA
CGGACGTGACGGGCGTGACGGAATTGATGGAAAAGATGGAAAACAAGGAC
CAGCTGGAAAACCTGGTAAAAATGGAGCTGATGGAATTGATGGGATAAAC
GGTGTAGACGGAAAAGACGGAAAAGATGGGATCAACGGAAACG
Run BLAST on NCBI

protein sequence of TCONS_00044939-protein

>TCONS_00044939-protein ID=TCONS_00044939-protein|Name=TCONS_00044939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
NISSINSRHLLIENTLSSNYHRAKKVKSVIMEKTIFYVALYTTMVALAYT
QVLNEGECNSSCKLGRDGRDGRDGIDGKDGKQGPAGKPGKNGADGIDGIN
GVDGKDGKDGINGN
Run BLAST on NCBI

transcript from alignment at sc0006499:1070..1809+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044939 ID=TCONS_00044939|Name=TCONS_00044939|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at sc0006499:1070..1809+ (Clytia hemisphaerica)
AATATATCTAGTATAAATAGCAGACATTTATTGATTGAGAACACACTTTC
AAGCAACTATCACAGGGCAAAGAAGGTAAAAAGCGTCATCATGGAGAAAA
CAATTTTCTACGTTGCTCTTTATACAACAATGGTAGCATTAGCTTACACG
CAAGTTCTGAATGAGGTGAgattaaacatttttttcatcacCCAATATCT
CATGTACGGTTCTTCCTCGACTTATATTTGTTTAAAATCCGATTATTAAC
TTACCCGTAGGGGCTTAGCTTAAATAAAGATGTAAATACTGCCAATGGAA
TTAAGGCTTTGAAATTCCATACACTCTGACATTACAGTATATCGCAAACT
TAAAAATCTTTGGCCGAGAGCGAGAGATGCAAAGTAGAGCTAAGAAAGGG
ATTAAGTTTGCAAATATTTGGTAATGTAATTTCGAGACAAAGCGAAAAAA
AAACCAATAGCAATAATAAGAATCTGGAAGCGCGTAGGTTAGAGGAGTGC
TTCTCATCCCAGATAACATAAACTTGTTTAGTAAtgataatttaaaattt
tttttattttagggaGAGTGTAACAGTTCATGTAAACTCGGGCGTGACGG
ACGTGACGGGCGTGACGGAATTGATGGAAAAGATGGAAAACAAGGACCAG
CTGGAAAACCTGGTAAAAATGGAGCTGATGGAATTGATGGGATAAACGGT
GTAGACGGAAAAGACGGAAAAGATGGGATCAACGGAAACG

Coding sequence (CDS) from alignment at sc0006499:1070..1809+

>TCONS_00044939 ID=TCONS_00044939|Name=TCONS_00044939|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0006499:1070..1809+ (Clytia hemisphaerica)
AATATATCTAGTATAAATAGCAGACATTTATTGATTGAGAACACACTTTC
AAGCAACTATCACAGGGCAAAGAAGGTAAAAAGCGTCATCATGGAGAAAA
CAATTTTCTACGTTGCTCTTTATACAACAATGGTAGCATTAGCTTACACG
CAAGTTCTGAATGAGggaGAGTGTAACAGTTCATGTAAACTCGGGCGTGA
CGGACGTGACGGGCGTGACGGAATTGATGGAAAAGATGGAAAACAAGGAC
CAGCTGGAAAACCTGGTAAAAATGGAGCTGATGGAATTGATGGGATAAAC
GGTGTAGACGGAAAAGACGGAAAAGATGGGATCAACGGAAACAATATATC
TAGTATAAATAGCAGACATTTATTGATTGAGAACACACTTTCAAGCAACT
ATCACAGGGCAAAGAAGGTAAAAAGCGTCATCATGGAGAAAACAATTTTC
TACGTTGCTCTTTATACAACAATGGTAGCATTAGCTTACACGCAAGTTCT
GAATGAGggaGAGTGTAACAGTTCATGTAAACTCGGGCGTGACGGACGTG
ACGGGCGTGACGGAATTGATGGAAAAGATGGAAAACAAGGACCAGCTGGA
AAACCTGGTAAAAATGGAGCTGATGGAATTGATGGGATAAACGGTGTAGA
CGGAAAAGACGGAAAAGATGGGATCAACGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028534XLOC_028534Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044939-proteinTCONS_00044939-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044939-exon-sc0006499-1491911889:1070..1234TCONS_00044939-exon-sc0006499-1491911889:1070..1234Clytia hemisphaericaexon
TCONS_00044939-exon-sc0006499-1510915933:1070..1234TCONS_00044939-exon-sc0006499-1510915933:1070..1234Clytia hemisphaericaexon
TCONS_00044939-exon-sc0006499-1575043694:1070..1234TCONS_00044939-exon-sc0006499-1575043694:1070..1234Clytia hemisphaericaexon
TCONS_00044939-exon-sc0006499-1491911889:1632..1809TCONS_00044939-exon-sc0006499-1491911889:1632..1809Clytia hemisphaericaexon
TCONS_00044939-exon-sc0006499-1510915933:1632..1809TCONS_00044939-exon-sc0006499-1510915933:1632..1809Clytia hemisphaericaexon
TCONS_00044939-exon-sc0006499-1575043694:1632..1809TCONS_00044939-exon-sc0006499-1575043694:1632..1809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006499supercontigsc0006499:1070..1809 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.69594	2.51971	0.720485	0.817032	4.5464	2.50537	6.46738	3.18667	1.18922	3.03989	0.536471	0.352655	0.176082	1.07225	6.46455	0.561952	0.198753	3.05573	0	0	0.255983	0	0.352416	0.413098	1.4213	1.01478	0.857209	0	0.349658	1.04081
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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