TCONS_00044936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044936
Unique NameTCONS_00044936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044936 ID=TCONS_00044936|Name=TCONS_00044936|organism=Clytia hemisphaerica|type=transcript|length=1087bp
CAAAATATTTGCATTAGTTTTTTAAAACCTGTCTACTTTTGTGATCGAAT
GTTGcccaaaaataattaaatgtttTGGAAACTCGAACACTTACGTGGCG
CGTGAAATTATGTTAGGAGAAAACAGctttgatcaaaaatatttcttcta
aAATTGAAACGTAGAATTTTAATTTCTCCTGAATGGTTCAACAGTTTTGT
TGTTTACCCGTTGTAAACACTGCGTCTTGTTTGTGGCGGGACGGCGGAAA
AGTGGGCGTATCATTATTTTTGGCATTACAAAATAATACCCCGTGGTAGG
ATAAAAGTGTGCAACCTAAATAAAATCATTCATATAATTACATCTTTAAA
CAAATGAAATAGTTTGTGCGGTTGATTCATCCAAAGTTTCTTCACTTCTA
CAATATGTGTTGTTTTAACTTTTCATTAAAATGGTTCTTCGTTTTTTGAT
ACCGGTAGGCGTAGAATAATTTCTGTTTCTTTATCATTATAGGTAGCTGG
CATACTGCAAAGATCCAATTTCCTTGGTGTTCAAAGTTGGtttaaaatac
caaaatggTTATCACGCACAAGCAGCAAGGTATTCGGTTTTCTGGGTTTA
GTTGACAATTCGGAGGAGTTTTCATCGCGCTCAGTATTGATGGGAGCCAC
GCCAGAGATTCACGAGGACATGCTTTATGATTACGCGATGCAGAGGGGGA
GAATGATGCCAAGAAGATTTGGACCTTCAAATGATAATAATCGTGAACAG
ATTGGTCAAGGTTATGCCGAAGTGATGAACCCCTCTTCCCCTTTCAATTT
CATACGACACCCATCCCCACCGCCACCGCCACCGCCACGCATCCCTTCAC
CGCCCACGCCACCCGAGAATCCTCAGCCTCCACAAGCTGAAATTTCAAGC
CCACAAACTGATAATGTGCCAGAAGAAAAGGTTCAAACGTTGGTTGATAT
GGGATTTGATCGTGATGCAGTGCTGAATGCTTTGGCAAGTACAGAAAATG
ATGTCAACCAAGCCACTGCCATTCTCCTCTCTGCTTCATGATCTCTAAGC
GGTACCCAGTAATTTAGGGTGGAACAGACAGAAGCTG
Run BLAST on NCBI

protein sequence of TCONS_00044936-protein

>TCONS_00044936-protein ID=TCONS_00044936-protein|Name=TCONS_00044936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MGATPEIHEDMLYDYAMQRGRMMPRRFGPSNDNNREQIGQGYAEVMNPSS
PFNFIRHPSPPPPPPPRIPSPPTPPENPQPPQAEISSPQTDNVPEEKVQT
LVDMGFDRDAVLNALASTENDVNQATAILLSAS
Run BLAST on NCBI

transcript from alignment at sc0006493:49..1820+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044936 ID=TCONS_00044936|Name=TCONS_00044936|organism=Clytia hemisphaerica|type=transcript|length=1772bp|location=Sequence derived from alignment at sc0006493:49..1820+ (Clytia hemisphaerica)
CAAAATATTTGCATTAGTTTTTTAAAACCTGTCTACTTTTGTGATCGAAT
GTTGcccaaaaataattaaatgtttTGGAAACTCGAACACTTACGTGGCG
CGTGAAATTATGTTAGGAGAAAACAGctttgatcaaaaatatttcttcta
aAATTGAAACGTAGAATTTTAATTTCTCCTGAATGGTTCAACAGTTTTGT
TGTTTACCCGTTGTAAACACTGCGTCTTGTTTGTGGCGGGACGGCGGAAA
AGTGGGCGTATCATTATTTTTGGCATTACAAAATAATACCCCGTGGTAGG
ATAAAAGTGTGCAACCTAAATAAAATCATTCATATAATTACATCTTTAAA
CAAATGAAATAGTTTGTGCGGTTGATTCATCCAAAGTTTCTTCACTTCTA
CAATATGTGTTGTTTTAACTTTTCATTAAAATGGTTCTTCGTTTTTTGAT
ACCGGTAGGCGTAGAATAATTTCTGTTTCTTTATCATTATAGGTAGCTGG
CATACTGCAAAGATCCAATTTCCTTGGTGTTCAAAGTTGGtttaaaatac
caaaatggTTATCACGCACAAGCAGCAAGGTATTCGGTTTTCTGGGTTTA
GTTGACAATTCGGAGGAGTTTTCATCGCGCTCAGTATTGATGGGAGCCAC
GCCAGAGATTCACGAGGACATGCTTTATGATTACGCGATGCAGAGGGGGA
GAATGATGCCAAGAAGATTTGGACCTTCAAATGATAATGTAAGTTGTCTT
GTACCAAAACAGTATGAAAGCTATCTGTTGTTGTTATTATACCTTTTCGC
TTAAACATTatcatttgttgaaaaatgattCTAACGttgtaaaaaaagtt
attttgttttttttacttttatcttGATTCTTTTTTAGTCTATCTTACAT
TAGAATTCCCCAAAAATTAATCTCAAAGTACACTAAACGCTAACACAATC
TTTTTTATCTTATAAAACTGTGTTTACTGATATTTTCTCTTTAGAATCGT
GAACAGATTGGTCAAGGTTATGCCGAAGTGATGAACCCCTCTTCCCCTTT
CAATTTCATACGACACCCATCCCCACCGCCACCGCCACCGCCACGCATCC
CTTCACCGCCCACGCCACCCGAGAATCCTCAGCCTCCACAAGCTGAAATT
TCAAGCCCACAAACTGATAATGTGCCAGAAGAAAAGGTACTAGGATACTT
CAAATCTGAAAATGTTTAACCCAGTGATTCTTTGCatataaaaacgaaaa
tttgaGACTTTCGATGATGTCAATTTTTGCGCAATGGTAaaggtttattt
tgaccgtttccgtttgacgtcatttttaccCGCGGTCAGCtatttttctt
ataactttataaaTGGTAAGAAAACATGTACATGGGGATTAAGTCACGCC
TTGCTTTAGCTCAAAGTTATTTCCCATTCCTTTCGGGTAAGGTTTTTGTT
GTTCGTTCTTGTTTGTTCTTGTTTTGTGGGTGAAATTCAAATCAGTTAGG
AACAGCAGCCTGCTTGAGTTTTGGTTGAAGATTTCCTTAACCGAATTTTG
TGAGATCGGTCTAAAGCTATCACATTAGaatagaaatttgaatttcgTCT
TCTATTTTAATATAGGTTCAAACGTTGGTTGATATGGGATTTGATCGTGA
TGCAGTGCTGAATGCTTTGGCAAGTACAGAAAATGATGTCAACCAAGCCA
CTGCCATTCTCCTCTCTGCTTCATGATCTCTAAGCGGTACCCAGTAATTT
AGGGTGGAACAGACAGAAGCTG

Coding sequence (CDS) from alignment at sc0006493:49..1820+

>TCONS_00044936 ID=TCONS_00044936|Name=TCONS_00044936|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0006493:49..1820+ (Clytia hemisphaerica)
ATGGGAGCCACGCCAGAGATTCACGAGGACATGCTTTATGATTACGCGAT
GCAGAGGGGGAGAATGATGCCAAGAAGATTTGGACCTTCAAATGATAATA
ATCGTGAACAGATTGGTCAAGGTTATGCCGAAGTGATGAACCCCTCTTCC
CCTTTCAATTTCATACGACACCCATCCCCACCGCCACCGCCACCGCCACG
CATCCCTTCACCGCCCACGCCACCCGAGAATCCTCAGCCTCCACAAGCTG
AAATTTCAAGCCCACAAACTGATAATGTGCCAGAAGAAAAGGTTCAAACG
TTGGTTGATATGGGATTTGATCGTGATGCAGTGCTGAATGCTTTGGCAAG
TACAGAAAATGATGTCAACCAAGCCACTGCCATTCTCCTCTCTGCTTCAT
GAATGGGAGCCACGCCAGAGATTCACGAGGACATGCTTTATGATTACGCG
ATGCAGAGGGGGAGAATGATGCCAAGAAGATTTGGACCTTCAAATGATAA
TAATCGTGAACAGATTGGTCAAGGTTATGCCGAAGTGATGAACCCCTCTT
CCCCTTTCAATTTCATACGACACCCATCCCCACCGCCACCGCCACCGCCA
CGCATCCCTTCACCGCCCACGCCACCCGAGAATCCTCAGCCTCCACAAGC
TGAAATTTCAAGCCCACAAACTGATAATGTGCCAGAAGAAAAGGTTCAAA
CGTTGGTTGATATGGGATTTGATCGTGATGCAGTGCTGAATGCTTTGGCA
AGTACAGAAAATGATGTCAACCAAGCCACTGCCATTCTCCTCTCTGCTTC
ATGAATGGGAGCCACGCCAGAGATTCACGAGGACATGCTTTATGATTACG
CGATGCAGAGGGGGAGAATGATGCCAAGAAGATTTGGACCTTCAAATGAT
AATAATCGTGAACAGATTGGTCAAGGTTATGCCGAAGTGATGAACCCCTC
TTCCCCTTTCAATTTCATACGACACCCATCCCCACCGCCACCGCCACCGC
CACGCATCCCTTCACCGCCCACGCCACCCGAGAATCCTCAGCCTCCACAA
GCTGAAATTTCAAGCCCACAAACTGATAATGTGCCAGAAGAAAAGGTTCA
AACGTTGGTTGATATGGGATTTGATCGTGATGCAGTGCTGAATGCTTTGG
CAAGTACAGAAAATGATGTCAACCAAGCCACTGCCATTCTCCTCTCTGCT
TCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028531XLOC_028531Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044936-proteinTCONS_00044936-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044936-exon-sc0006493-1491911889:49..786TCONS_00044936-exon-sc0006493-1491911889:49..786Clytia hemisphaericaexon
TCONS_00044936-exon-sc0006493-1510915933:49..786TCONS_00044936-exon-sc0006493-1510915933:49..786Clytia hemisphaericaexon
TCONS_00044936-exon-sc0006493-1575043694:49..786TCONS_00044936-exon-sc0006493-1575043694:49..786Clytia hemisphaericaexon
TCONS_00044936-exon-sc0006493-1491911889:1043..1234TCONS_00044936-exon-sc0006493-1491911889:1043..1234Clytia hemisphaericaexon
TCONS_00044936-exon-sc0006493-1510915933:1043..1234TCONS_00044936-exon-sc0006493-1510915933:1043..1234Clytia hemisphaericaexon
TCONS_00044936-exon-sc0006493-1575043694:1043..1234TCONS_00044936-exon-sc0006493-1575043694:1043..1234Clytia hemisphaericaexon
TCONS_00044936-exon-sc0006493-1491911889:1664..1820TCONS_00044936-exon-sc0006493-1491911889:1664..1820Clytia hemisphaericaexon
TCONS_00044936-exon-sc0006493-1510915933:1664..1820TCONS_00044936-exon-sc0006493-1510915933:1664..1820Clytia hemisphaericaexon
TCONS_00044936-exon-sc0006493-1575043694:1664..1820TCONS_00044936-exon-sc0006493-1575043694:1664..1820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006493supercontigsc0006493:49..1820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.61197	5.59636	14.1896	13.9918	14.6101	10.4461	10.5616	11.3693	8.52557	8.07759	8.36252	6.54901	6.32061	7.38792	5.33699	5.52834	6.76875	7.13644	6.25088	7.15719	9.91824	8.94301	8.64915	10.198	12.2302	12.6682	7.43076	5.49214	7.68106	7.23676
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015940UBA
IPR009060UBA-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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