TCONS_00044919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044919
Unique NameTCONS_00044919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044919 ID=TCONS_00044919|Name=TCONS_00044919|organism=Clytia hemisphaerica|type=transcript|length=1472bp
CTTACATTTTAGGCTTCCAGTCGAGACATATCAAAGTTTACTGCATTTTA
TGAAGAAGCTTGCAACATTCACTGTGCAAACCACGACAAAGTTCTCGTTG
GTTTGTTCCTTGGTCTCACGgagaaagatatcaaaagtGATTCTTTCCAA
CAATTTGTGGTGCAGCTACTCCAAAAACACGACAAGTTGCCTTTTGACGT
AGAACTAGCTATAGCTCGAGTTGGATTGCGACTGGTTCGCTATTACAATG
ACCAAGAGATGTGGCGAGACGCAGGCGATGTTGTAGAAGTATTCCACGCT
TACTCCATTTCATACGCTAATGCCGGTGAAGGTTTTGGAACACAGATGGA
GACGAAGGACGATCTAGCACATTGTAATATCAGTGAGTTGTGCACGCGGA
CGGCACTATACAGCAAGAAGTTGACGTTAGCGCCCGATGTATTCTCACAC
GTTCACCATTGTGTGAAATATGAAAATCTCTCCAGCGAGGATCAAGAGCT
TTATATTTCGACCGCTTCGGACATTATCACTGGCTCGTTTTTAGAAGCCC
CTGAGAAGACGGTTACTTTCTTTACGACTGTGTACAAAATCTTTGAGGAT
GAAATCTGTAGCGATCTTTTTAACACGATCATTGAAAAGATTCTGAATTC
CAAGGATACAATTCGTAAAGAAAAAGCCATTGAACTCCTTGCAGATTTGG
AGACAATCTCAGCCAACAAGATAAACGTATATTCCCATGAGACAATCAGA
AAGTTGGTTAAATTTTACAGCGAGATCAATCAAATGGAGGATGCCAGAAA
GTTTTTCTCTGAAGGTCGAGAAATGGGATTGTACAAAGAGACGTTCTTCG
ACAGCCAGCCCTTCTCGGTAGAAATCAAAACCGAAACTAATGCATTCGAG
ATCTACTTCATCATTGAGTCACATCTTGATCACATACTGAGACATCGTAT
CTTTGGAATAATTGGTAATACCCAAAGACTTTCAAGAGCACTCGATCTGC
TTGTTGTCCCAGCTGATGGTACTGATGGAGACCAATTCAATATGAGACTT
AATGAGACAATGCGAAACATTGGACGTGTGTTAACCAAAGAGTTTTGTCC
ACCACTCCAAATACTTGGAACCACAAGTCAGAAATTTACCGTATGTCCGG
GCTCCATCGCGCAATGGCACAAGCACAATATTTCCCGTAAATCTTTGGTT
AATGCCCAACGGAAACGTTCGGTAGTCAATATCAGGGATAATCAAGAGAA
TGAGCTAAGAATCCGGTTTTGTCCAACACCTTCTCATTCTTCTGACACCA
CTCAAGGACCGTTGGCATCCAACGCCTGTCCCCCCTCCAATCCGTCTCCT
CACGGCCAAAATTCTATTCCAGATATTAGATTTCCAGACACCAATATTCC
AACGTGTGCGCATCGCTATATTCGAAAAACACTTTGTACGTATCTGACCC
AAGAATACAAAACTAAAGGAGG
Run BLAST on NCBI

protein sequence of TCONS_00044919-protein

>TCONS_00044919-protein ID=TCONS_00044919-protein|Name=TCONS_00044919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MWRDAGDVVEVFHAYSISYANAGEGFGTQMETKDDLAHCNISELCTRTAL
YSKKLTLAPDVFSHVHHCVKYENLSSEDQELYISTASDIITGSFLEAPEK
TVTFFTTVYKIFEDEICSDLFNTIIEKILNSKDTIRKEKAIELLADLETI
SANKINVYSHETIRKLVKFYSEINQMEDARKFFSEGREMGLYKETFFDSQ
PFSVEIKTETNAFEIYFIIESHLDHILRHRIFGIIGNTQRLSRALDLLVV
PADGTDGDQFNMRLNETMRNIGRVLTKEFCPPLQILGTTSQKFTVCPGSI
AQWHKHNISRKSLVNAQRKRSVVNIRDNQENELRIRFCPTPSHSSDTTQG
PLASNACPPSNPSPHGQNSIPDIRFPDTNIPTCAHRYIRKTLCTYLTQEY
KTKG
Run BLAST on NCBI

transcript from alignment at sc0006466:203..1851+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044919 ID=TCONS_00044919|Name=TCONS_00044919|organism=Clytia hemisphaerica|type=transcript|length=1649bp|location=Sequence derived from alignment at sc0006466:203..1851+ (Clytia hemisphaerica)
CTTACATTTTAGGCTTCCAGTCGAGACATATCAAAGTTTACTGCATTTTA
TGAAGAAGCTTGCAACATTCACTGTGCAAACCACGACAAAGTTCTCGTTG
GTTTGTTCCTTGGTCTCACGgagaaagatatcaaaagtGATTCTTTCCAA
CAATTTGTGGTGCAGCTACTCCAAAAACACGACAAGTTGCCTTTTGACGT
AGAACTAGCTATAGCTCGAGTTGGATTGCGACTGGTTCGCTATTACAATG
ACCAAGAGATGTGGCGAGACGCAGGCGATGTTGTAGAAGTATTCCACGCT
TACTCCATTTCATACGCTAATGCCGGTGAAGGTTTTGGAACACAGATGGA
GACGAAGGACGATCTAGCACATTGTAATATCAGTGAGTTGTGCACGCGGA
CGGCACTATACAGCAAGAAGTTGACGTTAGCGCCCGATGTATTCTCACAC
GTTCACCATTGTGTGAAATATGAAAATCTCTCCAGCGAGGATCAAGAGCT
TTATATTTCGACCGCTTCGGACATTATCACTGGCTCGTTTTTAGAAGCCC
CTGAGAAGACGGTTACTTTCTTTACGACTGTGTACAAAATCTTTGAGGAT
GAAATCTGTAGCGATCTTTTTAACACGATCATTGAAAAGATTCTGAATTC
CAAGGATACAATTCGTAAAGAAAAAGCCATTGAACTCCTTGCAGATTTGG
AGACAATCTCAGCCAACAAGATAAACGTATATTCCCATGAGACAATCAGA
AAGTTGGTTAAATTTTACAGCGAGATCAATCAAATGGAGGATGCCAGAAA
GTTTTTCTCTGAAGGTCGAGAAATGGGATTGTACAAAGAGACGTTCTTCG
ACAGCCAGCCCTTCTCGGTAGAAATCAAAACCGAAACTAATGCATTCGAG
ATCTACTTCATCATTGAGTCACATCTTGATCACATACTGAGACATCGTAT
CTTTGGAATAATTGGTAATACCCAAAGACTTTCAAGAGCACTCGATCTGC
TTGTTGTCCCAGCTGATGGTACTGATGGAGACCAATTCAATATGAGACTT
AATGAGACAATGCGAAACATTGGACGTGTGTTAACCAAAGAGTTTTGTCC
ACCACTCCAAATACTTGGAACCACAAGTCAGGTAAGTGTGCATGAAAAAA
CGGACTTAAAATGTGTGGCTCTTTCTATAgttttgtcaattttatttgat
ttatttgtaaagttttaaccCGATTTCTCTGTCTAGATTTGAATTAATTT
CCCAAATTTATCCTAAATTTCATTGACAACTGATTATACTTGTGTTTATC
TCTTTTAGAAATTTACCGTATGTCCGGGCTCCATCGCGCAATGGCACAAG
CACAATATTTCCCGTAAATCTTTGGTTAATGCCCAACGGAAACGTTCGGT
AGTCAATATCAGGGATAATCAAGAGAATGAGCTAAGAATCCGGTTTTGTC
CAACACCTTCTCATTCTTCTGACACCACTCAAGGACCGTTGGCATCCAAC
GCCTGTCCCCCCTCCAATCCGTCTCCTCACGGCCAAAATTCTATTCCAGA
TATTAGATTTCCAGACACCAATATTCCAACGTGTGCGCATCGCTATATTC
GAAAAACACTTTGTACGTATCTGACCCAAGAATACAAAACTAAAGGAGG

Coding sequence (CDS) from alignment at sc0006466:203..1851+

>TCONS_00044919 ID=TCONS_00044919|Name=TCONS_00044919|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at sc0006466:203..1851+ (Clytia hemisphaerica)
ATGTGGCGAGACGCAGGCGATGTTGTAGAAGTATTCCACGCTTACTCCAT
TTCATACGCTAATGCCGGTGAAGGTTTTGGAACACAGATGGAGACGAAGG
ACGATCTAGCACATTGTAATATCAGTGAGTTGTGCACGCGGACGGCACTA
TACAGCAAGAAGTTGACGTTAGCGCCCGATGTATTCTCACACGTTCACCA
TTGTGTGAAATATGAAAATCTCTCCAGCGAGGATCAAGAGCTTTATATTT
CGACCGCTTCGGACATTATCACTGGCTCGTTTTTAGAAGCCCCTGAGAAG
ACGGTTACTTTCTTTACGACTGTGTACAAAATCTTTGAGGATGAAATCTG
TAGCGATCTTTTTAACACGATCATTGAAAAGATTCTGAATTCCAAGGATA
CAATTCGTAAAGAAAAAGCCATTGAACTCCTTGCAGATTTGGAGACAATC
TCAGCCAACAAGATAAACGTATATTCCCATGAGACAATCAGAAAGTTGGT
TAAATTTTACAGCGAGATCAATCAAATGGAGGATGCCAGAAAGTTTTTCT
CTGAAGGTCGAGAAATGGGATTGTACAAAGAGACGTTCTTCGACAGCCAG
CCCTTCTCGGTAGAAATCAAAACCGAAACTAATGCATTCGAGATCTACTT
CATCATTGAGTCACATCTTGATCACATACTGAGACATCGTATCTTTGGAA
TAATTGGTAATACCCAAAGACTTTCAAGAGCACTCGATCTGCTTGTTGTC
CCAGCTGATGGTACTGATGGAGACCAATTCAATATGAGACTTAATGAGAC
AATGCGAAACATTGGACGTGTGTTAACCAAAGAGTTTTGTCCACCACTCC
AAATACTTGGAACCACAAGTCAGAAATTTACCGTATGTCCGGGCTCCATC
GCGCAATGGCACAAGCACAATATTTCCCGTAAATCTTTGGTTAATGCCCA
ACGGAAACGTTCGGTAGTCAATATCAGGGATAATCAAGAGAATGAGCTAA
GAATCCGGTTTTGTCCAACACCTTCTCATTCTTCTGACACCACTCAAGGA
CCGTTGGCATCCAACGCCTGTCCCCCCTCCAATCCGTCTCCTCACGGCCA
AAATTCTATTCCAGATATTAGATTTCCAGACACCAATATTCCAACGTGTG
CGCATCGCTATATTCGAAAAACACTTTGTACGTATCTGACCCAAGAATAC
AAAACTAAAGGAATGTGGCGAGACGCAGGCGATGTTGTAGAAGTATTCCA
CGCTTACTCCATTTCATACGCTAATGCCGGTGAAGGTTTTGGAACACAGA
TGGAGACGAAGGACGATCTAGCACATTGTAATATCAGTGAGTTGTGCACG
CGGACGGCACTATACAGCAAGAAGTTGACGTTAGCGCCCGATGTATTCTC
ACACGTTCACCATTGTGTGAAATATGAAAATCTCTCCAGCGAGGATCAAG
AGCTTTATATTTCGACCGCTTCGGACATTATCACTGGCTCGTTTTTAGAA
GCCCCTGAGAAGACGGTTACTTTCTTTACGACTGTGTACAAAATCTTTGA
GGATGAAATCTGTAGCGATCTTTTTAACACGATCATTGAAAAGATTCTGA
ATTCCAAGGATACAATTCGTAAAGAAAAAGCCATTGAACTCCTTGCAGAT
TTGGAGACAATCTCAGCCAACAAGATAAACGTATATTCCCATGAGACAAT
CAGAAAGTTGGTTAAATTTTACAGCGAGATCAATCAAATGGAGGATGCCA
GAAAGTTTTTCTCTGAAGGTCGAGAAATGGGATTGTACAAAGAGACGTTC
TTCGACAGCCAGCCCTTCTCGGTAGAAATCAAAACCGAAACTAATGCATT
CGAGATCTACTTCATCATTGAGTCACATCTTGATCACATACTGAGACATC
GTATCTTTGGAATAATTGGTAATACCCAAAGACTTTCAAGAGCACTCGAT
CTGCTTGTTGTCCCAGCTGATGGTACTGATGGAGACCAATTCAATATGAG
ACTTAATGAGACAATGCGAAACATTGGACGTGTGTTAACCAAAGAGTTTT
GTCCACCACTCCAAATACTTGGAACCACAAGTCAGAAATTTACCGTATGT
CCGGGCTCCATCGCGCAATGGCACAAGCACAATATTTCCCGTAAATCTTT
GGTTAATGCCCAACGGAAACGTTCGGTAGTCAATATCAGGGATAATCAAG
AGAATGAGCTAAGAATCCGGTTTTGTCCAACACCTTCTCATTCTTCTGAC
ACCACTCAAGGACCGTTGGCATCCAACGCCTGTCCCCCCTCCAATCCGTC
TCCTCACGGCCAAAATTCTATTCCAGATATTAGATTTCCAGACACCAATA
TTCCAACGTGTGCGCATCGCTATATTCGAAAAACACTTTGTACGTATCTG
ACCCAAGAATACAAAACTAAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028517XLOC_028517Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044919-proteinTCONS_00044919-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044919-exon-sc0006466-1491911889:203..1333TCONS_00044919-exon-sc0006466-1491911889:203..1333Clytia hemisphaericaexon
TCONS_00044919-exon-sc0006466-1510915933:203..1333TCONS_00044919-exon-sc0006466-1510915933:203..1333Clytia hemisphaericaexon
TCONS_00044919-exon-sc0006466-1575043694:203..1333TCONS_00044919-exon-sc0006466-1575043694:203..1333Clytia hemisphaericaexon
TCONS_00044919-exon-sc0006466-1491911889:1511..1851TCONS_00044919-exon-sc0006466-1491911889:1511..1851Clytia hemisphaericaexon
TCONS_00044919-exon-sc0006466-1510915933:1511..1851TCONS_00044919-exon-sc0006466-1510915933:1511..1851Clytia hemisphaericaexon
TCONS_00044919-exon-sc0006466-1575043694:1511..1851TCONS_00044919-exon-sc0006466-1575043694:1511..1851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006466supercontigsc0006466:203..1851 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.73942	3.5269	5.77929	6.96365	66.4132	50.3909	26.6639	29.4828	13.4473	18.6546	14.275	10.4442	7.6862	10.5059	9.40435	10.8951	11.8037	12.2887	2.86114	3.98002	12.2396	11.519	8.6836	10.8041	13.7927	17.2992	2.66638	2.52703	8.78633	7.84565
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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