TCONS_00044914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044914
Unique NameTCONS_00044914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044914 ID=TCONS_00044914|Name=TCONS_00044914|organism=Clytia hemisphaerica|type=transcript|length=851bp
TTCAGAGGTTAAACCAGCACCTGACGCAGGGGATGATCCAGACGAGCCAA
AACCAGTTGATCCTAAACCACCTCCACCTCAACCCGCTAAATGGCGTTGT
ACATTACAATACACCCCATTCAACGATGAAGGCAAGGGTAAAAATTTCTA
CTTGGACCGTCATATGATTGCCTGTAAAGACAACCAAGCCGTCAAACGTT
TGAGACTCCGTCGAAACGGTAAAGGAAAATACCGCTACGAATTCACTTGT
TGTGATTTGCCCGTCAAATGtcaaaaacacaacaaaaaagcTACCGGATG
GAACGACGCCGGCAACGGAAATGCGGTTTATTTGGACCGTCATGACGTTA
ACGTCGGTAGTGAAGCTTTTTTGTCGGCTTTGAAATTGAACCGAAACGGA
CCAAACAAAATCCGATACAACTTTGACGCATGCGTGATTCCCGACAAGAA
ATCTTGTTACAGCGCCCGAACAGTGATGAACGACGACGGCAGTGGAAACA
CCGTCTATTTGGACCGACACAATATCGAATGCCGTTCAAATTACGGTATC
CAACGTTTGAAATTGGTCCGTAACAGTAAAGGAAATAAATACCAATATCA
TTTCACTTGTTGCACCGTCAAAGAGATTATACAGCGACCAGAGCCAGTTA
AACCAGAACCACCAAAGCCAATTGTCAAACCAGAGCCATTCAAACCAGAT
GAACCTGAAGTTGAGGAGCCTGAAAAACCAAGTAAGTATTTCAGCTGTCa
agcaatacacgtttttttataagaacaaactatatataagaacatcaggc
ttcgatggccaagatgttaggaacaagttaagaacattttaaggctttgc
g
Run BLAST on NCBI

protein sequence of TCONS_00044914-protein

>TCONS_00044914-protein ID=TCONS_00044914-protein|Name=TCONS_00044914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
SEVKPAPDAGDDPDEPKPVDPKPPPPQPAKWRCTLQYTPFNDEGKGKNFY
LDRHMIACKDNQAVKRLRLRRNGKGKYRYEFTCCDLPVKCQKHNKKATGW
NDAGNGNAVYLDRHDVNVGSEAFLSALKLNRNGPNKIRYNFDACVIPDKK
SCYSARTVMNDDGSGNTVYLDRHNIECRSNYGIQRLKLVRNSKGNKYQYH
FTCCTVKEIIQRPEPVKPEPPKPIVKPEPFKPDEPEVEEPEKPSKYFSCQ
AIHVFL
Run BLAST on NCBI

transcript from alignment at sc0006460:118..1854-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044914 ID=TCONS_00044914|Name=TCONS_00044914|organism=Clytia hemisphaerica|type=transcript|length=1737bp|location=Sequence derived from alignment at sc0006460:118..1854- (Clytia hemisphaerica)
TTCAGAGGTTAAACCAGCACCTGACGCAGGGGATGATCCAGACGAGCCAA
AACCAGTTGATCCTAAACCACCTCCACCTCAACCCGGTATGTACCCTGGA
CAATAAAGACTAACCTAAATTTTTTATCAGAGTTTTCTTTTATTATTTTT
GTACTCTGATGTAAGAATTACTATTCATGATATTCATGACGTAATGTTTT
CTATGGAAAGACCCCAATTTTTGCCAGCAAATTTTATACAACTTTTGTCT
AGTTTAAATTTGCCACTACTGGCTAAAACCGAGCTATTTCCGTAGAAAAC
ATTACGTCATGAATATCATGAATTCGTAGTGGTAAATATACCTTACCGAA
GAATATCGTCATAAGAGGAAGAGCCCACGTTAAGTATCATTACGATATCA
GATCTACAAAAAAACACGTGTTAAGACTTAAAATTGGAAATTGTATAGGA
GTCAGAGATCAATAACTCATTAGTTATTTTTGTATTTTAATTTCAGCTAA
ATGGCGTTGTACATTACAATACACCCCATTCAACGATGAAGGCAAGGGTA
AAAATTTCTACTTGGACCGTCATATGATTGCCTGTAAAGACAACCAAGCC
GTCAAACGTTTGAGACTCCGTCGAAACGGTAAAGGAAAATACCGCTACGA
ATTCACTTGTTGTGATTTGCCCGTCAAATGTCAAAAACACAACAAAAAAG
CTACCGGATGGAACGACGCCGGCAACGGAAATGCGGTTTATTTGGACCGT
CATGACGTTAACGTCGGTAGTGAAGCTTTTTTGTCGGCTTTGAAATTGAA
CCGAAACGGACCAAACAAAATCCGATACAACTTTGACGCATGCGTGATTC
CCGACAAGAAATCTTGTTACAGCGCCCGAACAGTGATGAACGACGACGGC
AGTGGAAACACCGTCTATTTGGACCGACACAATATCGAATGCCGTTCAAA
TTACGGTATCCAACGTTTGAAATTGGTCCGTAACAGTAAAGGAAATAAAT
ACCAATATCATTTCACTTGTTGCACCGTCAAAGAGATTATACAGCGTAAG
AAATATTTGCATTCAATCTTTTAACACACTTCACTCGAAAGCCGTAAAAT
TGTTACGTTTTCCTCCAAGACTTATCAACGGGGGGTAACTCTCGAACGGG
AATTTTATACACGACTAACATCCCCTTTTTTAAACATATCAAAGGGGATG
CGTACAGCCTACGTTATTAGACACAACTGTGAGCATTTTAAGAATACGTA
TTAATTATACGGCCTAAAATTGCAGTTACAATTAAGTAATAAAGAATCAC
CTCTGTTTTATCTTACAGGACCAGAGCCAGTTAAACCAGAACCACCAAAG
CCAATTGTCAAACCAGAGCCATTCAAACCAGATGGTAGGTGTAAATTTGT
ATGAATTAATAAGTTAATTATACAGTTGCATTATGGGATATGGGAGAAAA
TGATTACCCATTTCAGAATGTCATTTTTCACAGAAAAACACGTGTACATC
GTATAAAAAGAACAACAGTAATCAAAAATTAATTGATCATAAAATAAAAA
CCTCTTCATTGAAAACATTTTCCCCTTTATTTTTCAGAACCTGAAGTTGA
GGAGCCTGAAAAACCAAGTAAGTATTTCAGCTGTCAAGCAATACACGTTT
TTTTATAAGAACAAACTATATATAAGAACATCAGGCTTCGATGGCCAAGA
TGTTAGGAACAAGTTAAGAACATTTTAAGGCTTTGCG

Coding sequence (CDS) from alignment at sc0006460:118..1854-

>TCONS_00044914 ID=TCONS_00044914|Name=TCONS_00044914|organism=Clytia hemisphaerica|type=CDS|length=3084bp|location=Sequence derived from alignment at sc0006460:118..1854- (Clytia hemisphaerica)
AACCTGAAGTTGAGGAGCCTGAAAAACCAAGTAAGTATTTCAGCTGTCAA
GCAATACACGTTTTTTTATAAGACCAGAGCCAGTTAAACCAGAACCACCA
AAGCCAATTGTCAAACCAGAGCCATTCAAACCAGATGCTAAATGGCGTTG
TACATTACAATACACCCCATTCAACGATGAAGGCAAGGGTAAAAATTTCT
ACTTGGACCGTCATATGATTGCCTGTAAAGACAACCAAGCCGTCAAACGT
TTGAGACTCCGTCGAAACGGTAAAGGAAAATACCGCTACGAATTCACTTG
TTGTGATTTGCCCGTCAAATGTCAAAAACACAACAAAAAAGCTACCGGAT
GGAACGACGCCGGCAACGGAAATGCGGTTTATTTGGACCGTCATGACGTT
AACGTCGGTAGTGAAGCTTTTTTGTCGGCTTTGAAATTGAACCGAAACGG
ACCAAACAAAATCCGATACAACTTTGACGCATGCGTGATTCCCGACAAGA
AATCTTGTTACAGCGCCCGAACAGTGATGAACGACGACGGCAGTGGAAAC
ACCGTCTATTTGGACCGACACAATATCGAATGCCGTTCAAATTACGGTAT
CCAACGTTTGAAATTGGTCCGTAACAGTAAAGGAAATAAATACCAATATC
ATTTCACTTGTTGCACCGTCAAAGAGATTATACAGCTCAGAGGTTAAACC
AGCACCTGACGCAGGGGATGATCCAGACGAGCCAAAACCAGTTGATCCTA
AACCACCTCCACCTCAACCCGAACCTGAAGTTGAGGAGCCTGAAAAACCA
AGTAAGTATTTCAGCTGTCAAGCAATACACGTTTTTTTATAAGACCAGAG
CCAGTTAAACCAGAACCACCAAAGCCAATTGTCAAACCAGAGCCATTCAA
ACCAGATGCTAAATGGCGTTGTACATTACAATACACCCCATTCAACGATG
AAGGCAAGGGTAAAAATTTCTACTTGGACCGTCATATGATTGCCTGTAAA
GACAACCAAGCCGTCAAACGTTTGAGACTCCGTCGAAACGGTAAAGGAAA
ATACCGCTACGAATTCACTTGTTGTGATTTGCCCGTCAAATGTCAAAAAC
ACAACAAAAAAGCTACCGGATGGAACGACGCCGGCAACGGAAATGCGGTT
TATTTGGACCGTCATGACGTTAACGTCGGTAGTGAAGCTTTTTTGTCGGC
TTTGAAATTGAACCGAAACGGACCAAACAAAATCCGATACAACTTTGACG
CATGCGTGATTCCCGACAAGAAATCTTGTTACAGCGCCCGAACAGTGATG
AACGACGACGGCAGTGGAAACACCGTCTATTTGGACCGACACAATATCGA
ATGCCGTTCAAATTACGGTATCCAACGTTTGAAATTGGTCCGTAACAGTA
AAGGAAATAAATACCAATATCATTTCACTTGTTGCACCGTCAAAGAGATT
ATACAGCTCAGAGGTTAAACCAGCACCTGACGCAGGGGATGATCCAGACG
AGCCAAAACCAGTTGATCCTAAACCACCTCCACCTCAACCCGAACCTGAA
GTTGAGGAGCCTGAAAAACCAAGTAAGTATTTCAGCTGTCAAGCAATACA
CGTTTTTTTATAAGACCAGAGCCAGTTAAACCAGAACCACCAAAGCCAAT
TGTCAAACCAGAGCCATTCAAACCAGATGCTAAATGGCGTTGTACATTAC
AATACACCCCATTCAACGATGAAGGCAAGGGTAAAAATTTCTACTTGGAC
CGTCATATGATTGCCTGTAAAGACAACCAAGCCGTCAAACGTTTGAGACT
CCGTCGAAACGGTAAAGGAAAATACCGCTACGAATTCACTTGTTGTGATT
TGCCCGTCAAATGTCAAAAACACAACAAAAAAGCTACCGGATGGAACGAC
GCCGGCAACGGAAATGCGGTTTATTTGGACCGTCATGACGTTAACGTCGG
TAGTGAAGCTTTTTTGTCGGCTTTGAAATTGAACCGAAACGGACCAAACA
AAATCCGATACAACTTTGACGCATGCGTGATTCCCGACAAGAAATCTTGT
TACAGCGCCCGAACAGTGATGAACGACGACGGCAGTGGAAACACCGTCTA
TTTGGACCGACACAATATCGAATGCCGTTCAAATTACGGTATCCAACGTT
TGAAATTGGTCCGTAACAGTAAAGGAAATAAATACCAATATCATTTCACT
TGTTGCACCGTCAAAGAGATTATACAGCTCAGAGGTTAAACCAGCACCTG
ACGCAGGGGATGATCCAGACGAGCCAAAACCAGTTGATCCTAAACCACCT
CCACCTCAACCCGAACCTGAAGTTGAGGAGCCTGAAAAACCAAGTAAGTA
TTTCAGCTGTCAAGCAATACACGTTTTTTTATAAGACCAGAGCCAGTTAA
ACCAGAACCACCAAAGCCAATTGTCAAACCAGAGCCATTCAAACCAGATG
CTAAATGGCGTTGTACATTACAATACACCCCATTCAACGATGAAGGCAAG
GGTAAAAATTTCTACTTGGACCGTCATATGATTGCCTGTAAAGACAACCA
AGCCGTCAAACGTTTGAGACTCCGTCGAAACGGTAAAGGAAAATACCGCT
ACGAATTCACTTGTTGTGATTTGCCCGTCAAATGTCAAAAACACAACAAA
AAAGCTACCGGATGGAACGACGCCGGCAACGGAAATGCGGTTTATTTGGA
CCGTCATGACGTTAACGTCGGTAGTGAAGCTTTTTTGTCGGCTTTGAAAT
TGAACCGAAACGGACCAAACAAAATCCGATACAACTTTGACGCATGCGTG
ATTCCCGACAAGAAATCTTGTTACAGCGCCCGAACAGTGATGAACGACGA
CGGCAGTGGAAACACCGTCTATTTGGACCGACACAATATCGAATGCCGTT
CAAATTACGGTATCCAACGTTTGAAATTGGTCCGTAACAGTAAAGGAAAT
AAATACCAATATCATTTCACTTGTTGCACCGTCAAAGAGATTATACAGCT
CAGAGGTTAAACCAGCACCTGACGCAGGGGATGATCCAGACGAGCCAAAA
CCAGTTGATCCTAAACCACCTCCACCTCAACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028512XLOC_028512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044914-exon-sc0006460-1575043694:1769..1854TCONS_00044914-exon-sc0006460-1575043694:1769..1854Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1575043694:810..1358TCONS_00044914-exon-sc0006460-1575043694:810..1358Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1575043694:471..536TCONS_00044914-exon-sc0006460-1575043694:471..536Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1575043694:118..267TCONS_00044914-exon-sc0006460-1575043694:118..267Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1510915933:1769..1854TCONS_00044914-exon-sc0006460-1510915933:1769..1854Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1510915933:810..1358TCONS_00044914-exon-sc0006460-1510915933:810..1358Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1510915933:471..536TCONS_00044914-exon-sc0006460-1510915933:471..536Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1510915933:118..267TCONS_00044914-exon-sc0006460-1510915933:118..267Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1491911889:1769..1854TCONS_00044914-exon-sc0006460-1491911889:1769..1854Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1491911889:810..1358TCONS_00044914-exon-sc0006460-1491911889:810..1358Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1491911889:471..536TCONS_00044914-exon-sc0006460-1491911889:471..536Clytia hemisphaericaexon
TCONS_00044914-exon-sc0006460-1491911889:118..267TCONS_00044914-exon-sc0006460-1491911889:118..267Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044914-proteinTCONS_00044914-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006460supercontigsc0006460:118..1854 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0625697	0.0612146	0.670706	0.58889	0.777703	1.19724	1.02449	0.576815	16.2363	15.752	67.4685	76.5266	32.6971	132.173	34.1417	37.2902	0.058744	0.184518	45.7864	37.3717	24.5209	36.3486	62.7439	70.5321	11.2146	1.85997	0.490686	0.216993
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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