TCONS_00044906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044906
Unique NameTCONS_00044906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044906 ID=TCONS_00044906|Name=TCONS_00044906|organism=Clytia hemisphaerica|type=transcript|length=502bp
GAACCAGTCAGAAATAAATgccatgtaacaagcacataaaaatttcgagt
aaaagcgtgatttgtcttcagactttaatttttcaacctgtgtatttcat
ttttacaaaacttttccaAAACAACTTGCCATTTAAAtgataaaattctt
ttttcctAAAGCTTTCGCTGGGGCAAAAAACTAGTTTTGAGCTTTTGAAG
ATTTACATTCCCTTCCCTTCAAACTCCATAAAAAACATAGACTAGCAGGC
TAGTCTGTTAATCAATCATGTCAGAAGGCAGGAACATAAGGGCGGAGGAG
ATGCGTAGGAGAACGGAGAACTTTATTTCTATACCGAATGGGTAGACCCT
ACTTTTTGCTATGTACAAATTTACAACTAcaaattataaataaataaaaa
taatcgaAAAATAACGTCACAAACTAAGAGTCTAAACCCATTCTTTGATA
AAGTCTATGTTGTGCGTTATCGCAACATTTCTCATACTGTTTTGCCGTGA
CC
Run BLAST on NCBI

transcript from alignment at sc0006436:2..503

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044906 ID=TCONS_00044906|Name=TCONS_00044906|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at sc0006436:2..503 (Clytia hemisphaerica)
GGTCACGGCAAAACAGTATGAGAAATGTTGCGATAACGCACAACATAGAC
TTTATCAAAGAATGGGTTTAGACTCTTAGTTTGTGACGTTATTTTtcgat
tatttttatttatttataatttgTAGTTGTAAATTTGTACATAGCAAAAA
GTAGGGTCTACCCATTCGGTATAGAAATAAAGTTCTCCGTTCTCCTACGC
ATCTCCTCCGCCCTTATGTTCCTGCCTTCTGACATGATTGATTAACAGAC
TAGCCTGCTAGTCTATGTTTTTTATGGAGTTTGAAGGGAAGGGAATGTAA
ATCTTCAAAAGCTCAAAACTAGTTTTTTGCCCCAGCGAAAGCTTTaggaa
aaaagaattttatcaTTTAAATGGCAAGTTGTTTtggaaaagttttgtaa
aaatgaaatacacaggttgaaaaattaaagtctgaagacaaatcacgctt
ttactcgaaatttttatgtgcttgttacatggcATTTATTTCTGACTGGT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028504XLOC_028504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044906-exon-sc0006436-1491911889:2..503TCONS_00044906-exon-sc0006436-1491911889:2..503Clytia hemisphaericaexon
TCONS_00044906-exon-sc0006436-1510915933:2..503TCONS_00044906-exon-sc0006436-1510915933:2..503Clytia hemisphaericaexon
TCONS_00044906-exon-sc0006436-1575043694:2..503TCONS_00044906-exon-sc0006436-1575043694:2..503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006436supercontigsc0006436:2..503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168303	0.962336	1.13857	1.26462	1.03464	0.941351	0.960139	1.06297	0.410846	0.690772	1.29381	0.405649	1.58059	1.98651	2.28691	1.63792	1.66928	2.05374	0.278789	1.04967	2.24483	2.03889	0.741842	1.4776	0	0.473082	4.07599	7.20762	54.3824	56.3739
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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