TCONS_00044902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044902
Unique NameTCONS_00044902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044902 ID=TCONS_00044902|Name=TCONS_00044902|organism=Clytia hemisphaerica|type=transcript|length=408bp
ATTTCGAAGGATTGCAAGTGTTGCTTCACGTCCACAGTGGAAGTTTGATT
CGTGGAAATGCAGTGTAAGGATTCTCGCGATGGGATGTTTCTTGCAGATG
ACGATTTGATGCTTACGAGTGTAGTCGACTTTTGCATGCATGATACGACC
ACCAACACGAAGGATGCCATCATCATCTACGAACGGTTTGAGTTGAAGAA
GTTTTTTGCTCTTCATAGCAGTCGTTTCGTCTGTGAATGATTCTCTTTGT
GCGACTTGGATGATGACCTTCTCAGCTTCTTCTAATTCGTTTGATGTAAG
AATCTTCCAATTGATTGGTTGCGTctttgattttcgaaaattgcgTTTGA
TCTTCAACAGCCATGCGACCTGACGTTTGAGCTTCGACCAAGATGAATAG
TGATCCNN
Run BLAST on NCBI

protein sequence of TCONS_00044902-protein

>TCONS_00044902-protein ID=TCONS_00044902-protein|Name=TCONS_00044902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
XDHYSSWSKLKRQVAWLLKIKRNFRKSKTQPINWKILTSNELEEAEKVII
QVAQRESFTDETTAMKSKKLLQLKPFVDDDGILRVGGRIMHAKVDYTRKH
QIVICKKHPIARILTLHFHESNFHCGREATLAILRN
Run BLAST on NCBI

transcript from alignment at sc0006420:1497..1904

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044902 ID=TCONS_00044902|Name=TCONS_00044902|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0006420:1497..1904 (Clytia hemisphaerica)
NNGGATCACTATTCATCTTGGTCGAAGCTCAAACGTCAGGTCGCATGGCT
GTTGAAGATCAAAcgcaattttcgaaaatcaaagACGCAACCAATCAATT
GGAAGATTCTTACATCAAACGAATTAGAAGAAGCTGAGAAGGTCATCATC
CAAGTCGCACAAAGAGAATCATTCACAGACGAAACGACTGCTATGAAGAG
CAAAAAACTTCTTCAACTCAAACCGTTCGTAGATGATGATGGCATCCTTC
GTGTTGGTGGTCGTATCATGCATGCAAAAGTCGACTACACTCGTAAGCAT
CAAATCGTCATCTGCAAGAAACATCCCATCGCGAGAATCCTTACACTGCA
TTTCCACGAATCAAACTTCCACTGTGGACGTGAAGCAACACTTGCAATCC
TTCGAAAT

Coding sequence (CDS) from alignment at sc0006420:1497..1904

>TCONS_00044902 ID=TCONS_00044902|Name=TCONS_00044902|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0006420:1497..1904 (Clytia hemisphaerica)
NNGGATCACTATTCATCTTGGTCGAAGCTCAAACGTCAGGTCGCATGGCT
GTTGAAGATCAAAcgcaattttcgaaaatcaaagACGCAACCAATCAATT
GGAAGATTCTTACATCAAACGAATTAGAAGAAGCTGAGAAGGTCATCATC
CAAGTCGCACAAAGAGAATCATTCACAGACGAAACGACTGCTATGAAGAG
CAAAAAACTTCTTCAACTCAAACCGTTCGTAGATGATGATGGCATCCTTC
GTGTTGGTGGTCGTATCATGCATGCAAAAGTCGACTACACTCGTAAGCAT
CAAATCGTCATCTGCAAGAAACATCCCATCGCGAGAATCCTTACACTGCA
TTTCCACGAATCAAACTTCCACTGTGGACGTGAAGCAACACTTGCAATCC
TTCGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028500XLOC_028500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044902-exon-sc0006420-1491911889:1497..1904TCONS_00044902-exon-sc0006420-1491911889:1497..1904Clytia hemisphaericaexon
TCONS_00044902-exon-sc0006420-1510915933:1497..1904TCONS_00044902-exon-sc0006420-1510915933:1497..1904Clytia hemisphaericaexon
TCONS_00044902-exon-sc0006420-1575043694:1497..1904TCONS_00044902-exon-sc0006420-1575043694:1497..1904Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044902-proteinTCONS_00044902-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006420supercontigsc0006420:1497..1904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.35656	1.39081	0	0.394973	3.12547	4.42169	0.916829	2.78955	1.50233	2.41915	0.722487	1.30607	0.592843	0.123135	0.101233	0	0.803005	0.685879	0.379031	0.198315	0.517114	1.51338	0.204412	0	1.33988	1.02498	0	0.521783	0	0.604816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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