TCONS_00044898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044898
Unique NameTCONS_00044898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044898 ID=TCONS_00044898|Name=TCONS_00044898|organism=Clytia hemisphaerica|type=transcript|length=234bp
CATAGTATTGATGAAATTATGTCGAAAACATTCGATTTACAATCCCAGTT
ACCACCCTTACCTCTTCCTACACTTCAAGATACTTGCAATAAATATCTTG
ATTCAGTGAAACCTTTTTTGACAAAAGATGAATTTATGGAAACAGAATTT
AAAGTTGAGCTCTTCCAAAATGGAATCGGAAAAGAGCTTCACAACAAGTT
GATGCAATTAGCAAAACATTCTAAAAATTGGGTA
Run BLAST on NCBI

transcript from alignment at sc0006413:752..1437-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044898 ID=TCONS_00044898|Name=TCONS_00044898|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at sc0006413:752..1437- (Clytia hemisphaerica)
CATAGTATTGATGAAATTATGTCGAAAACATTCGATTTACAATCCCAGTT
ACCACCCTTACCTCTTCCTACACTTCAAGATACTTGCAATAAATATCTTG
ATTCAGGTAAGGTACATTTCATTCATTCTCTCGGTTGTTGGTCTCTAATA
TTTTATTTGTCACTTTTTCCTACTAAATAATCAAAGAATGTACAATAAAA
TTGCCTTCATATCAATAATCGTGATGGCAGAGTGCTCCTTACATTGATTT
GTACAAGACTCGTTTGAAACATGCTCGTCTTGTATAAAATTTGCTTCCGA
GAGTTAGTTTATTTGAATTAAAAATTTGAATGGCTAGAGGTTAAAAGTAC
ATTGGATTTCTAAACCTTTTAAAGGAAATAGAAAAACAGGTTATCCAAAA
TTTGAGGTAACTCTTGGATAGGAATTTTATACACGATTAGCATCATCAAA
ACATATCAGAGGGGATGCTAGCAGCCAGTTGCATTCTAGGGTGTCTTTAT
GTGTGTGCAACGTGAAAAGCATTGCTGGTTAAATAAATCTTTATATTTCT
TTTTATAGTGAAACCTTTTTTGACAAAAGATGAATTTATGGAAACAGAAT
TTAAAGTTGAGCTCTTCCAAAATGGAATCGGAAAAGAGCTTCACAACAAG
TTGATGCAATTAGCAAAACATTCTAAAAATTGGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028496XLOC_028496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044898-exon-sc0006413-1575043694:1332..1437TCONS_00044898-exon-sc0006413-1575043694:1332..1437Clytia hemisphaericaexon
TCONS_00044898-exon-sc0006413-1575043694:752..879TCONS_00044898-exon-sc0006413-1575043694:752..879Clytia hemisphaericaexon
TCONS_00044898-exon-sc0006413-1510915933:1332..1437TCONS_00044898-exon-sc0006413-1510915933:1332..1437Clytia hemisphaericaexon
TCONS_00044898-exon-sc0006413-1510915933:752..879TCONS_00044898-exon-sc0006413-1510915933:752..879Clytia hemisphaericaexon
TCONS_00044898-exon-sc0006413-1491911889:1332..1437TCONS_00044898-exon-sc0006413-1491911889:1332..1437Clytia hemisphaericaexon
TCONS_00044898-exon-sc0006413-1491911889:752..879TCONS_00044898-exon-sc0006413-1491911889:752..879Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006413supercontigsc0006413:752..1437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.75378	3.22237	2.02928	1.41905	10.2524	5.84165	14.4864	16.7608	3.08962	1.46222	11.8217	1.34579	2.75852	1.17294	1.79914	2.89709	12.7552	0	0	0	0	0.681194	0	1.25095	0	8.52715	7.99225	0	4.10414	0.86687
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top