TCONS_00044878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044878
Unique NameTCONS_00044878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044878 ID=TCONS_00044878|Name=TCONS_00044878|organism=Clytia hemisphaerica|type=transcript|length=323bp
AAAAGACCGGCGTACGAGCATCTCTAGCATTTGCTGGATATCCCACAGGC
GTGGCGAGGGCAGCAAAAATGATGAAGCAAATTATAATCTTTTGTGTTTT
AGTAGCGACCGTTACGGCTGAAGAAGCTGTGAAAGATAAAAGACAGTTTG
ATTGGTTGAAGAATTTGTGGAAAAACACCCAAAGACCTGGAACAGAATAC
CCGGAATGGCGCACAACACACAGACCTTATAGAAATGGCACTGACTACCC
ATGGTGGAAAACCACTCGAAGATCAGGCACTGACTACCCAAGGTGGCGCA
CAACACACAGACCTTACAGAANN
Run BLAST on NCBI

protein sequence of TCONS_00044878-protein

>TCONS_00044878-protein ID=TCONS_00044878-protein|Name=TCONS_00044878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
KTGVRASLAFAGYPTGVARAAKMMKQIIIFCVLVATVTAEEAVKDKRQFD
WLKNLWKNTQRPGTEYPEWRTTHRPYRNGTDYPWWKTTRRSGTDYPRWRT
THRPYRX
Run BLAST on NCBI

transcript from alignment at sc0006374:914..1972-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044878 ID=TCONS_00044878|Name=TCONS_00044878|organism=Clytia hemisphaerica|type=transcript|length=1059bp|location=Sequence derived from alignment at sc0006374:914..1972- (Clytia hemisphaerica)
AAAAGACCGGCGTACGAGCATCTCTAGCATTTGCTGGATATCCCACAGGC
GTGGCGAGGGCAGCAAAAATGATGAAGCAAATTATAATCTTTTGTGTTTT
AGTAGCGACCGTTACGGCTGAAGAAGCTGTGAAAGATAAAAGACAGGTAC
GAAACTTTCCTAGCGTCTCTTTTTGGGGGACCATAGTATGATTTTCTTCG
CAATTTCTAAGACAAAAAAACTTTTGCTAAGATAGGAAAGGAATACAATA
TATTTGGCAAAAGAAATCNTTCTTCGCAATTTCTAAGACAAAAAAACTTT
TGCTAAGATAGGAAAGGAATACAATATATTTGGCAAAAGAAATCCAAATC
GAAAATACCCCCACCCTCCTTTCTACCCCCTAAGCAACCTTCAAACTCTT
AATCAAGATTGTACTGGGAGTAGAAGGATGCCTAGGCTCAAGTTATCAAC
TGAAACAAAAAAAAAGAGGTTTGCCAATATATTAATTTCACCATTGGGCT
TTTCCAGAAAAAAAAACGTATATCCCCTGTTGAGGAGGTCCATCCCTCTG
TGGCTGGAAATGCTGTAACCCCCTGGAATTCCAGGCAATTTCAGGTGTAA
ACCCCTCTGGAATTCTGAATCTTAGTAGGATTTAACGGCTACACCCACGG
AATTCCAGTTATTTTTGACAGATTTTTGTATCTCCCTATGGAATTCCGCC
ACATATCAAACCTTACCCCCTTGGAACGAAATGAACCTCCTCAACAGGGG
GTATACAGTTTTTTTCTGGAAAAGCCCATTGTAGGTGCCAACTTTATAAC
TATTTAAACCTTATGACCAGAAATTGACATGGAAAAATAGCTCAATATAA
GAACAAAGTCGTTCAATACTATTTAATTTTAGTTTGATTGGTTGAAGAAT
TTGTGGAAAAACACCCAAAGACCTGGAACAGAATACCCGGAATGGCGCAC
AACACACAGACCTTATAGAAATGGCACTGACTACCCATGGTGGAAAACCA
CTCGAAGATCAGGCACTGACTACCCAAGGTGGCGCACAACACACAGACCT
TACAGAANN

Coding sequence (CDS) from alignment at sc0006374:914..1972-

>TCONS_00044878 ID=TCONS_00044878|Name=TCONS_00044878|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0006374:914..1972- (Clytia hemisphaerica)
TTTGATTGGTTGAAGAATTTGTGGAAAAACACCCAAAGACCTGGAACAGA
ATACCCGGAATGGCGCACAACACACAGACCTTATAGAAATGGCACTGACT
ACCCATGGTGGAAAACCACTCGAAGATCAGGCACTGACTACCCAAGGTGG
CGCACAACACACAGACCTTACAGAANNAAGACCGGCGTACGAGCATCTCT
AGCATTTGCTGGATATCCCACAGGCGTGGCGAGGGCAGCAAAAATGATGA
AGCAAATTATAATCTTTTGTGTTTTAGTAGCGACCGTTACGGCTGAAGAA
GCTGTGAAAGATAAAAGACAGTTTGATTGGTTGAAGAATTTGTGGAAAAA
CACCCAAAGACCTGGAACAGAATACCCGGAATGGCGCACAACACACAGAC
CTTATAGAAATGGCACTGACTACCCATGGTGGAAAACCACTCGAAGATCA
GGCACTGACTACCCAAGGTGGCGCACAACACACAGACCTTACAGAANNAA
GACCGGCGTACGAGCATCTCTAGCATTTGCTGGATATCCCACAGGCGTGG
CGAGGGCAGCAAAAATGATGAAGCAAATTATAATCTTTTGTGTTTTAGTA
GCGACCGTTACGGCTGAAGAAGCTGTGAAAGATAAAAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028480XLOC_028480Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044878-proteinTCONS_00044878-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044878-exon-sc0006374-1575043694:1827..1972TCONS_00044878-exon-sc0006374-1575043694:1827..1972Clytia hemisphaericaexon
TCONS_00044878-exon-sc0006374-1575043694:914..1090TCONS_00044878-exon-sc0006374-1575043694:914..1090Clytia hemisphaericaexon
TCONS_00044878-exon-sc0006374-1510915933:1827..1972TCONS_00044878-exon-sc0006374-1510915933:1827..1972Clytia hemisphaericaexon
TCONS_00044878-exon-sc0006374-1510915933:914..1090TCONS_00044878-exon-sc0006374-1510915933:914..1090Clytia hemisphaericaexon
TCONS_00044878-exon-sc0006374-1491911889:1827..1972TCONS_00044878-exon-sc0006374-1491911889:1827..1972Clytia hemisphaericaexon
TCONS_00044878-exon-sc0006374-1491911889:914..1090TCONS_00044878-exon-sc0006374-1491911889:914..1090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006374supercontigsc0006374:914..1972 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.374545	5.35176	4.1391	6.60826	2.88597	347.456	355.32	0.5301	1.51701	132.612	156.423	1492.1	1631.27	671.437	856.689	226.943	304.493	529.591	534.457	0	0	2.22651	5.97102
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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