TCONS_00044876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044876
Unique NameTCONS_00044876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044876 ID=TCONS_00044876|Name=TCONS_00044876|organism=Clytia hemisphaerica|type=transcript|length=375bp
CAACAAACAGACCTTACAGAAATGGTACTGACTACCCATGGTGGCGTACC
ACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAACTACTCATCGATC
AGGTACTGACTACCCATGGTGGAAGACTACTCATCGATCCGGTACTGACT
ATCCATGGTGGAAAACTACTCGAAGATCAGGCACTGACTACCCATGGTGG
AAAACTACTCGAAGATCAGGCACTGACTATCCATGGTGGAAAACTACTCG
AAGATCAGGCACTGACTACCCATGGTGGAAGACTACTCGAAGATCAGGCA
CTGACTACCCATGGTGGAAAACCACTCGAAGATCAGGCACTGACTACCCA
TGGTGGAAAACCACTCGAAGATCAG
Run BLAST on NCBI

protein sequence of TCONS_00044876-protein

>TCONS_00044876-protein ID=TCONS_00044876-protein|Name=TCONS_00044876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
QQTDLTEMVLTTHGGVPLEDQALTTHGGKLLIDQVLTTHGGRLLIDPVLT
IHGGKLLEDQALTTHGGKLLEDQALTIHGGKLLEDQALTTHGGRLLEDQA
LTTHGGKPLEDQALTTHGGKPLEDQ
Run BLAST on NCBI

transcript from alignment at sc0006374:1..804-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044876 ID=TCONS_00044876|Name=TCONS_00044876|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at sc0006374:1..804- (Clytia hemisphaerica)
CAACAAACAGACCTTACAGAAATGGTACTGACTACCCATGGTGGCGTACC
ACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAACTACTCATCGATC
AGGTACTGACTACCCATGGTGGCGTACCACTCGAAGATCAGGTACTGACT
ACCCATGGTGGAAGACTACTCATCGATCCGGTACTGACTATCCATGGTGG
AAAACTACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAACTACTCG
AAGATCAGGCACTGACTATCCATGGTGGAAAACTACTCGAAAATCAGGTA
CTGACTACCCATGGTGGAAAACCACTCGAAGATCAGGCACTGACTACCCA
TGGTGGAAAACCACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAAC
CACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAACCACTCGAAGAT
CAGGCACTGACTATCCATGGTGGAAAACTACTCGAAGATCAGGCACTGAC
TACCCATGGTGGAAGACTACTCGAAGATCAGGCACTGACTACCCATGGTG
GAAAACCACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAACCACTC
GAAGATCAGGCACTGACTACCCATGGTGGAAAACCACTCGAAGATCAGGC
ACTGACTATCCATGGTGGAAAACTACTCGAAGATCAGGCACTGACTACCC
ATGGTGGAAGACTACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAA
CCACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAACCACTCGAAGA
TCAG

Coding sequence (CDS) from alignment at sc0006374:1..804-

>TCONS_00044876 ID=TCONS_00044876|Name=TCONS_00044876|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0006374:1..804- (Clytia hemisphaerica)
GCACTGACTATCCATGGTGGAAAACTACTCGAAGATCAGGCACTGACTAC
CCATGGTGGAAGACTACTCGAAGATCAGGCACTGACTACCCATGGTGGAA
AACCACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAACCACTCGAA
GATCAGGTACTGACTACCCATGGTGGAAGACTACTCATCGATCCGGTACT
GACTATCCATGGTGGAAAACTACTCGAAGATCAGGCACTGACTACCCATG
GTGGAAAACTACTCGAAGATCAGCAACAAACAGACCTTACAGAAATGGTA
CTGACTACCCATGGTGGCGTACCACTCGAAGATCAGGCACTGACTACCCA
TGGTGGAAAACTACTCATCGATCAGGCACTGACTATCCATGGTGGAAAAC
TACTCGAAGATCAGGCACTGACTACCCATGGTGGAAGACTACTCGAAGAT
CAGGCACTGACTACCCATGGTGGAAAACCACTCGAAGATCAGGCACTGAC
TACCCATGGTGGAAAACCACTCGAAGATCAGGTACTGACTACCCATGGTG
GAAGACTACTCATCGATCCGGTACTGACTATCCATGGTGGAAAACTACTC
GAAGATCAGGCACTGACTACCCATGGTGGAAAACTACTCGAAGATCAGCA
ACAAACAGACCTTACAGAAATGGTACTGACTACCCATGGTGGCGTACCAC
TCGAAGATCAGGCACTGACTACCCATGGTGGAAAACTACTCATCGATCAG
GCACTGACTATCCATGGTGGAAAACTACTCGAAGATCAGGCACTGACTAC
CCATGGTGGAAGACTACTCGAAGATCAGGCACTGACTACCCATGGTGGAA
AACCACTCGAAGATCAGGCACTGACTACCCATGGTGGAAAACCACTCGAA
GATCAGGTACTGACTACCCATGGTGGAAGACTACTCATCGATCCGGTACT
GACTATCCATGGTGGAAAACTACTCGAAGATCAGGCACTGACTACCCATG
GTGGAAAACTACTCGAAGATCAGCAACAAACAGACCTTACAGAAATGGTA
CTGACTACCCATGGTGGCGTACCACTCGAAGATCAGGCACTGACTACCCA
TGGTGGAAAACTACTCATCGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028479XLOC_028479Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044876-proteinTCONS_00044876-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044876-exon-sc0006374-1575043694:703..804TCONS_00044876-exon-sc0006374-1575043694:703..804Clytia hemisphaericaexon
TCONS_00044876-exon-sc0006374-1575043694:547..663TCONS_00044876-exon-sc0006374-1575043694:547..663Clytia hemisphaericaexon
TCONS_00044876-exon-sc0006374-1575043694:1..156TCONS_00044876-exon-sc0006374-1575043694:1..156Clytia hemisphaericaexon
TCONS_00044876-exon-sc0006374-1510915933:703..804TCONS_00044876-exon-sc0006374-1510915933:703..804Clytia hemisphaericaexon
TCONS_00044876-exon-sc0006374-1510915933:547..663TCONS_00044876-exon-sc0006374-1510915933:547..663Clytia hemisphaericaexon
TCONS_00044876-exon-sc0006374-1510915933:1..156TCONS_00044876-exon-sc0006374-1510915933:1..156Clytia hemisphaericaexon
TCONS_00044876-exon-sc0006374-1491911889:703..804TCONS_00044876-exon-sc0006374-1491911889:703..804Clytia hemisphaericaexon
TCONS_00044876-exon-sc0006374-1491911889:547..663TCONS_00044876-exon-sc0006374-1491911889:547..663Clytia hemisphaericaexon
TCONS_00044876-exon-sc0006374-1491911889:1..156TCONS_00044876-exon-sc0006374-1491911889:1..156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006374supercontigsc0006374:1..804 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.46561	0.505542	13.655	4.35569	17.7162	10.0379	814.475	850.244	0.42426	2.91886	279.963	318.596	3354.98	3579.97	1084.93	1309.48	411.696	542.181	378.708	358.521	0	0	4.05839	5.29888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top