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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044873 ID=TCONS_00044873|Name=TCONS_00044873|organism=Clytia hemisphaerica|type=transcript|length=1642bp
CTGTTTTCAATGAAGAATATTACGATGAAGAAGATGATGAAAAACCTGAA
TTTTCTGATGACGAAATGGAAGGTATgtttttcgttcgttcgttggtTCA
ATGCATTCATTCTTTCATTAATTCATTCGCTAATTCACCCAAGAAATCTT
ATTGATGTATTTATATCATTAAACATTATACTAAAGACCTAATTCGATAC
ATTTGTCAAGTTTGAAGTAGAAAGTAGAGATTATGTTGTTGAAGCATTAA
ATtttaaatcgaaaaaacacTCCAACATCAAATAGTTTCTGGGCCAACAA
AAAAATACATGATCGGAAAGTTCAAGAGGGAATTTCTCTCCGTTTGTTAG
AAGATTGATTATTTGTTGTTCATCGCTTTTGTGGAGTAGCCTGACAGAAT
TTAACAACAAATTCGTTAAGTTGATAACAACATTAAGGCAACGTTCATTT
TCATCAATATTGATTGCTATACTGTTTGAATTTCGACACCAATCTTTGGT
TAGCTCATTGAATCGTTCAAACGTGTCAGTTACAATCACTGTAATATATT
GACAGTTGAAAACTTCAAGTTTGACAAAGGAACCATGCAAAGTTCCGATT
GGCATTGATGCAAACATATTAAGtctatttttgtacattttgctAAAGAA
TTTTTCTTGATAAAGTTTCATTGCCTCAGTAAACTTCTTTGAGTAGGGTC
GGTCGTGTCCAATGTCTCCACCACTTAAATCTTCAACAATGCTGTTGAAT
TCTTTGACAGTTTTATTACTCCTATACAATACTTCACCAAGGTATGCTTG
GCAATTCGCACCAAAACAGTGCCCACTTCCTAAAACGTTATGTAGCCTGC
TAACCTTATCTGCGAACCATTCTAAGCTTCTAATATCTTTAGCTTGTAAT
TTTTCACTCTCAACCAATGTCTCCATTCTCCTATTAATCGATTTGATTTT
GCTTCCAATTTCATTGATCTTGACTTTCTCAAGCTTCTCCAGCTTTGAAT
GAAGAGTTGATACTACTTCGCTTTTTTCCTGATCTTTGTCCGATTTTTCC
GTCTCGATCGCCTTTATTTTTTCAGTTAGTACTTCTTCTCTTATGTGGAA
ATCGTTCTCCAAATTAGCTTGCTTTGTATTCAAGTCTTGAATCAGTTTGT
TCTGTTCATCAACTTCTGTGGTCAAATCAACGTtttcttttgcaattttg
tccaaTCTTTGCACATTTTCAGCATTATTTTGCGATTCTCTTGCCATTTC
TTTTTGGATGATCATATTTTCGTTTTCCAATATTCCGACCTTTTCTTGCA
AGTCTTGAATGAGACCTTTTTGATTATTCATTTCTTTGTGGAGTTCTTCT
CGATCTTTCCAATACGTTTTAACGACATTCAGAAGTAATGTTTGATGAAA
CATGCTATTCGTTTGACCGTGTGCTTCCAGATTCCCTCTTATCACCTgaa
gcgaaaaaaaaaacaaaaaaacactgTCCAACGAGTCATCAACTTCAAAA
Cgtgaacatttttttataacaatattcataatattcatgacgtaatgttt
tatacggaaacacgcCAGTTTttaccagtagtggcaaatttaagaaATAG
CCAGTGAAAAATCCTTTAAAAATTTGCAACTACTGGAGGAAA Run BLAST on NCBI protein sequence of TCONS_00044873-protein >TCONS_00044873-protein ID=TCONS_00044873-protein|Name=TCONS_00044873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
MNIMNIVIKKCSRFEVDDSLDSVFLFFFSLQVIRGNLEAHGQTNSMFHQT
LLLNVVKTYWKDREELHKEMNNQKGLIQDLQEKVGILENENMIIQKEMAR
ESQNNAENVQRLDKIAKENVDLTTEVDEQNKLIQDLNTKQANLENDFHIR
EEVLTEKIKAIETEKSDKDQEKSEVVSTLHSKLEKLEKVKINEIGSKIKS
INRRMETLVESEKLQAKDIRSLEWFADKVSRLHNVLGSGHCFGANCQAYL
GEVLYRSNKTVKEFNSIVEDLSGGDIGHDRPYSKKFTEAMKLYQEKFFSK
MYKNRLNMFASMPIGTLHGSFVKLEVFNCQYITVIVTDTFERFNELTKDW
CRNSNSIAINIDENERCLNVVINLTNLLLNSVRLLHKSDEQQIINLLTNG
EKFPLELSDHVFFCWPRNYLMLECFFDLKFNASTT Run BLAST on NCBI transcript from alignment at sc0006367:342..1983 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044873 ID=TCONS_00044873|Name=TCONS_00044873|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at sc0006367:342..1983 (Clytia hemisphaerica)
TTTCCTCCAGTAGTTGCAAATTTTTAAAGGATTTTTCACTGGCTATttct
taaatttgccactactggtaaAAACTGgcgtgtttccgtataaaacatta
cgtcatgaatattatgaatattgttataaaaaaatgttcacGTTTTGAAG
TTGATGACTCGTTGGAcagtgtttttttgttttttttttcgcttcAGGTG
ATAAGAGGGAATCTGGAAGCACACGGTCAAACGAATAGCATGTTTCATCA
AACATTACTTCTGAATGTCGTTAAAACGTATTGGAAAGATCGAGAAGAAC
TCCACAAAGAAATGAATAATCAAAAAGGTCTCATTCAAGACTTGCAAGAA
AAGGTCGGAATATTGGAAAACGAAAATATGATCATCCAAAAAGAAATGGC
AAGAGAATCGCAAAATAATGCTGAAAATGTGCAAAGAttggacaaaattg
caaaagaaaACGTTGATTTGACCACAGAAGTTGATGAACAGAACAAACTG
ATTCAAGACTTGAATACAAAGCAAGCTAATTTGGAGAACGATTTCCACAT
AAGAGAAGAAGTACTAACTGAAAAAATAAAGGCGATCGAGACGGAAAAAT
CGGACAAAGATCAGGAAAAAAGCGAAGTAGTATCAACTCTTCATTCAAAG
CTGGAGAAGCTTGAGAAAGTCAAGATCAATGAAATTGGAAGCAAAATCAA
ATCGATTAATAGGAGAATGGAGACATTGGTTGAGAGTGAAAAATTACAAG
CTAAAGATATTAGAAGCTTAGAATGGTTCGCAGATAAGGTTAGCAGGCTA
CATAACGTTTTAGGAAGTGGGCACTGTTTTGGTGCGAATTGCCAAGCATA
CCTTGGTGAAGTATTGTATAGGAGTAATAAAACTGTCAAAGAATTCAACA
GCATTGTTGAAGATTTAAGTGGTGGAGACATTGGACACGACCGACCCTAC
TCAAAGAAGTTTACTGAGGCAATGAAACTTTATCAAGAAAAATTCTTTag
caaaatgtacaaaaatagaCTTAATATGTTTGCATCAATGCCAATCGGAA
CTTTGCATGGTTCCTTTGTCAAACTTGAAGTTTTCAACTGTCAATATATT
ACAGTGATTGTAACTGACACGTTTGAACGATTCAATGAGCTAACCAAAGA
TTGGTGTCGAAATTCAAACAGTATAGCAATCAATATTGATGAAAATGAAC
GTTGCCTTAATGTTGTTATCAACTTAACGAATTTGTTGTTAAATTCTGTC
AGGCTACTCCACAAAAGCGATGAACAACAAATAATCAATCTTCTAACAAA
CGGAGAGAAATTCCCTCTTGAACTTTCCGATCATGTATTTTTTTGTTGGC
CCAGAAACTATTTGATGTTGGAgtgttttttcgatttaaaATTTAATGCT
TCAACAACATAATCTCTACTTTCTACTTCAAACTTGACAAATGTATCGAA
TTAGGTCTTTAGTATAATGTTTAATGATATAAATACATCAATAAGATTTC
TTGGGTGAATTAGCGAATGAATTAATGAAAGAATGAATGCATTGAaccaa
cgaacgaacgaaaaacATACCTTCCATTTCGTCATCAGAAAATTCAGGTT
TTTCATCATCTTCTTCATCGTAATATTCTTCATTGAAAACAG Coding sequence (CDS) from alignment at sc0006367:342..1983 >TCONS_00044873 ID=TCONS_00044873|Name=TCONS_00044873|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0006367:342..1983 (Clytia hemisphaerica)
atgaatattatgaatattgttataaaaaaatgttcacGTTTTGAAGTTGA
TGACTCGTTGGAcagtgtttttttgttttttttttcgcttcAGGTGATAA
GAGGGAATCTGGAAGCACACGGTCAAACGAATAGCATGTTTCATCAAACA
TTACTTCTGAATGTCGTTAAAACGTATTGGAAAGATCGAGAAGAACTCCA
CAAAGAAATGAATAATCAAAAAGGTCTCATTCAAGACTTGCAAGAAAAGG
TCGGAATATTGGAAAACGAAAATATGATCATCCAAAAAGAAATGGCAAGA
GAATCGCAAAATAATGCTGAAAATGTGCAAAGAttggacaaaattgcaaa
agaaaACGTTGATTTGACCACAGAAGTTGATGAACAGAACAAACTGATTC
AAGACTTGAATACAAAGCAAGCTAATTTGGAGAACGATTTCCACATAAGA
GAAGAAGTACTAACTGAAAAAATAAAGGCGATCGAGACGGAAAAATCGGA
CAAAGATCAGGAAAAAAGCGAAGTAGTATCAACTCTTCATTCAAAGCTGG
AGAAGCTTGAGAAAGTCAAGATCAATGAAATTGGAAGCAAAATCAAATCG
ATTAATAGGAGAATGGAGACATTGGTTGAGAGTGAAAAATTACAAGCTAA
AGATATTAGAAGCTTAGAATGGTTCGCAGATAAGGTTAGCAGGCTACATA
ACGTTTTAGGAAGTGGGCACTGTTTTGGTGCGAATTGCCAAGCATACCTT
GGTGAAGTATTGTATAGGAGTAATAAAACTGTCAAAGAATTCAACAGCAT
TGTTGAAGATTTAAGTGGTGGAGACATTGGACACGACCGACCCTACTCAA
AGAAGTTTACTGAGGCAATGAAACTTTATCAAGAAAAATTCTTTagcaaa
atgtacaaaaatagaCTTAATATGTTTGCATCAATGCCAATCGGAACTTT
GCATGGTTCCTTTGTCAAACTTGAAGTTTTCAACTGTCAATATATTACAG
TGATTGTAACTGACACGTTTGAACGATTCAATGAGCTAACCAAAGATTGG
TGTCGAAATTCAAACAGTATAGCAATCAATATTGATGAAAATGAACGTTG
CCTTAATGTTGTTATCAACTTAACGAATTTGTTGTTAAATTCTGTCAGGC
TACTCCACAAAAGCGATGAACAACAAATAATCAATCTTCTAACAAACGGA
GAGAAATTCCCTCTTGAACTTTCCGATCATGTATTTTTTTGTTGGCCCAG
AAACTATTTGATGTTGGAgtgttttttcgatttaaaATTTAATGCTTCAA
CAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044873-exon-sc0006367-1491911889:342..1983 | TCONS_00044873-exon-sc0006367-1491911889:342..1983 | Clytia hemisphaerica | exon |
| TCONS_00044873-exon-sc0006367-1510915933:342..1983 | TCONS_00044873-exon-sc0006367-1510915933:342..1983 | Clytia hemisphaerica | exon |
| TCONS_00044873-exon-sc0006367-1575043694:342..1983 | TCONS_00044873-exon-sc0006367-1575043694:342..1983 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006367 | supercontig | sc0006367:342..1983 . |
Blast
The following BLAST results are available for this feature:
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