TCONS_00044869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044869
Unique NameTCONS_00044869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044869 ID=TCONS_00044869|Name=TCONS_00044869|organism=Clytia hemisphaerica|type=transcript|length=649bp
AGATAACATACAAAGTTAATTCTTTGTAGGCCCAATGACTGGAATCAAAT
GTTCCCTATCGATGGCGGTACCTCATTTGttcaaattgtttttcaatttt
aagattttccagcctcattgttcttaaaaaaaaacacatttaaaaaaggg
ttaaaaatctaATTTATGACTTACATTTCCACCGCACCGGTGAATAATGG
TTTATTAACGATCAGGTGTTTTTTTTGATCGGGTGCTGGTGGCGACGTGG
GCAGAAGTGGTGTCCGCTAACGTAACACCCTCgctggttttcaaaatttt
ttgaaaagctagTAGCCTGCTAATAAAGTCTTAAAAAGATTTGCAATTTT
GAATCTATGTAAGGAATATTTGGAAATTTACTTGTGGATCTTCTTCTTGA
ATGTTTTATGCAGCCATTTTACCAATCTTGGCGAATTAACGAAAGAAAGT
AAGGGAAcaatgtaaaatgtaaaaaattaatcaattaaatagaaattata
aatataaaaaaataatcaaataaaagataaaaagctATTTTGTCTAAGAT
AGGTACATAATGAGAGGATTATTTAAAACAGAAGATCAATTAAACTTAGC
CGTGCCAAAAGAAGGCAAGCTTGATATTGTAATCTTACCCTGGTACAAG
Run BLAST on NCBI

transcript from alignment at sc0006359:10..658

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044869 ID=TCONS_00044869|Name=TCONS_00044869|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at sc0006359:10..658 (Clytia hemisphaerica)
CTTGTACCAGGGTAAGATTACAATATCAAGCTTGCCTTCTTTTGGCACGG
CTAAGTTTAATTGATCTTCTGTTTTAAATAATCCTCTCATTATGTACCTA
TCTTAGACAAAATagctttttatcttttatttgattatttttttatattt
ataatttctatttaattgattaattttttacattttacattgTTCCCTTA
CTTTCTTTCGTTAATTCGCCAAGATTGGTAAAATGGCTGCATAAAACATT
CAAGAAGAAGATCCACAAGTAAATTTCCAAATATTCCTTACATAGATTCA
AAATTGCAAATCTTTTTAAGACTTTATTAGCAGGCTActagcttttcaaa
aaattttgaaaaccagcGAGGGTGTTACGTTAGCGGACACCACTTCTGCC
CACGTCGCCACCAGCACCCGATCAAAAAAAACACCTGATCGTTAATAAAC
CATTATTCACCGGTGCGGTGGAAATGTAAGTCATAAATtagatttttaac
ccttttttaaatgtgtttttttttaagaacaatgaggctggaaaatctta
aaattgaaaaacaatttgaaCAAATGAGGTACCGCCATCGATAGGGAACA
TTTGATTCCAGTCATTGGGCCTACAAAGAATTAACTTTGTATGTTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028472XLOC_028472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044869-exon-sc0006359-1491911889:10..658TCONS_00044869-exon-sc0006359-1491911889:10..658Clytia hemisphaericaexon
TCONS_00044869-exon-sc0006359-1510915933:10..658TCONS_00044869-exon-sc0006359-1510915933:10..658Clytia hemisphaericaexon
TCONS_00044869-exon-sc0006359-1575043694:10..658TCONS_00044869-exon-sc0006359-1575043694:10..658Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006359supercontigsc0006359:10..658 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45136	2.35884	0.821653	0.267953	0	0.0859244	0	0	0	0	0	0.0537	0.107251	0.111381	0.503636	0.491344	0.302648	0.248163	0.257138	0.0896923	0.155918	0.456307	1.38675	1.17671	0.17314	0	0.221123	0.235988	1.78989	1.73243
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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