TCONS_00044866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044866
Unique NameTCONS_00044866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044866 ID=TCONS_00044866|Name=TCONS_00044866|organism=Clytia hemisphaerica|type=transcript|length=676bp
AGTACATTCAAAGATAATCTATGTCTTTTGCCAAGTGGAATTTGAGACGT
AGTAAACTGATTCCACTCGTTTTTACTGCGTTAAATAATCCCTTCTTTCT
TTTGCAGACATTCGAGTATCCGGCGATTCTTGGTAATCGACACCAGTCAA
TTCATATTGGTTGAACCAGATACTAGCAAACTGGGATGGGGCGTCGTCAA
ATTTGTCTCTCATTTACAGgaCGTTGAAGCGACACCGGATAAAGACGACA
GCCGTTCCCTACACATCGTCATTCAACAACCTTTCACACGACGCTCAAAA
TCTGGTTTCAACCCTCTTCCAGTACTCACCGCAAAATTCGTTTTTGATGA
TTATATACGTTGCATGTCCGCGCGGCAACGCTTACAAAAGAGATGCGATG
CTTTACGACACCGGAAGATGACCAACATTGCAACGCTATTGGAGTTACCA
GCACTCGCTTCACCGACCAACTATTACTCTATCACAAGTGGTGTGGATAA
TGGAAATGCCGTCTGGTCTCCGTCAAGCCGAAGCTATTCATCCTCGCGCA
ATGCGAGTGGTTACAGTTCACCCGTTCATTCGCCGAACACCTCCAATACA
CCTTCCGCCACCTCTTTACATACGCCTCAAACCAAATCACGTCTTCTTTC
ACCAAAAATGGAACAGATACTACAGA
Run BLAST on NCBI

protein sequence of TCONS_00044866-protein

>TCONS_00044866-protein ID=TCONS_00044866-protein|Name=TCONS_00044866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MSARQRLQKRCDALRHRKMTNIATLLELPALASPTNYYSITSGVDNGNAV
WSPSSRSYSSSRNASGYSSPVHSPNTSNTPSATSLHTPQTKSRLLSPKME
QILQ
Run BLAST on NCBI

transcript from alignment at sc0006352:1..1093-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044866 ID=TCONS_00044866|Name=TCONS_00044866|organism=Clytia hemisphaerica|type=transcript|length=1093bp|location=Sequence derived from alignment at sc0006352:1..1093- (Clytia hemisphaerica)
AGTACATTCAAAGATAATCTATGTCTTTTGCCAAGTGGAATTTGAGACGT
AGTAAACTGATTCCACTCGTTTTTACTGCGTTAAATAATCCCTTCTTTCT
TTTGCAGACATTCGAGTATCCGGCGATTCTTGGTAATCGACACCAGTCAA
TTCATATTGGTTGAACCAGATACTAGCAAACTGGGATGGGGCGTCGTCAA
ATTTGTCTCTCATTTACAGGTTAGATCTTTTTAAATTCTATAGGCCTTTT
TGTAAATTATTTTCATTTCAACGGTTGCTTCGTTTTGAAGCCATTATCAA
GGTGATTGAATCTCATGATTGTCCAAGTGTTGCTTTGATAAATAGAGTAA
ACTTCTTGCCACAACTCCTTAATGAATCAACTTTGCAACATTTTGAAAAC
GAGGTAAGCGTTGTTCTTGACGTAATTTATGAAAAAAAGGTATATTTTTT
AGCTGTGTTAGGTTTTTAAGAAATACCTCCTCTTATAATAGGCCCAAAAA
TCTTAAACTTTGTCCATTAACACGATAAGAAACAAGTTTCGGTGTTTTGG
TGAAAAATCACAGTGTCTGTCTGGGTGTTTCTTTTGGGAAATATCAAGAA
TTGACTCGTTTTTATCTTTATATTTTATTATTTTAGGACGTTGAAGCGAC
ACCGGATAAAGACGACAGCCGTTCCCTACACATCGTCATTCAACAACCTT
TCACACGACGCTCAAAATCTGGTTTCAACCCTCTTCCAGTACTCACCGCA
AAATTCGTTTTTGATGATTATATACGTTGCATGTCCGCGCGGCAACGCTT
ACAAAAGAGATGCGATGCTTTACGACACCGGAAGATGACCAACATTGCAA
CGCTATTGGAGTTACCAGCACTCGCTTCACCGACCAACTATTACTCTATC
ACAAGTGGTGTGGATAATGGAAATGCCGTCTGGTCTCCGTCAAGCCGAAG
CTATTCATCCTCGCGCAATGCGAGTGGTTACAGTTCACCCGTTCATTCGC
CGAACACCTCCAATACACCTTCCGCCACCTCTTTACATACGCCTCAAACC
AAATCACGTCTTCTTTCACCAAAAATGGAACAGATACTACAGA

Coding sequence (CDS) from alignment at sc0006352:1..1093-

>TCONS_00044866 ID=TCONS_00044866|Name=TCONS_00044866|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0006352:1..1093- (Clytia hemisphaerica)
ATGTCCGCGCGGCAACGCTTACAAAAGAGATGCGATGCTTTACGACACCG
GAAGATGACCAACATTGCAACGCTATTGGAGTTACCAGCACTCGCTTCAC
CGACCAACTATTACTCTATCACAAGTGGTGTGGATAATGGAAATGCCGTC
TGGTCTCCGTCAAGCCGAAGCTATTCATCCTCGCGCAATGCGAGTGGTTA
CAGTTCACCCGTTCATTCGCCGAACACCTCCAATACACCTTCCGCCACCT
CTTTACATACGCCTCAAACCAAATCACGTCTTCTTTCACCAAAAATGGAA
CAGATACTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028469XLOC_028469Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044866-proteinTCONS_00044866-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044866-exon-sc0006352-1575043694:875..1093TCONS_00044866-exon-sc0006352-1575043694:875..1093Clytia hemisphaericaexon
TCONS_00044866-exon-sc0006352-1575043694:1..457TCONS_00044866-exon-sc0006352-1575043694:1..457Clytia hemisphaericaexon
TCONS_00044866-exon-sc0006352-1510915933:875..1093TCONS_00044866-exon-sc0006352-1510915933:875..1093Clytia hemisphaericaexon
TCONS_00044866-exon-sc0006352-1510915933:1..457TCONS_00044866-exon-sc0006352-1510915933:1..457Clytia hemisphaericaexon
TCONS_00044866-exon-sc0006352-1491911889:875..1093TCONS_00044866-exon-sc0006352-1491911889:875..1093Clytia hemisphaericaexon
TCONS_00044866-exon-sc0006352-1491911889:1..457TCONS_00044866-exon-sc0006352-1491911889:1..457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006352supercontigsc0006352:1..1093 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.53904	5.05125	4.22956	5.55906	8.39564	4.7994	3.7005	3.32013	3.13041	5.53566	2.86561	2.75155	3.6364	4.59789	2.69764	3.05902	4.34658	4.21567	3.59706	3.0918	3.46638	4.10968	6.60222	7.97756	3.40138	4.24178	3.76616	2.79121	9.27881	8.74668
Blast
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BLAST of TCONS_00044866 vs. Swiss-Prot (Human)
Match: CL16A (Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.227e-27
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 1 
Query:  118 IRRFLVIDTSQFILVEPDTSKLGWGVVKFVSHLQDVEATPDKDDSRSLHIVIQQPFTRRSKSGFNPLPVLTAKFVFDDYIRCMSARQRLQKRCDALRHRKMTNIATLLELP 450
            ++RFL +D  Q  LVEPD S+LGWGVVKF   LQD++ T  +DDSR+L+I I +P    S     P P+L A F+F D+IRC+ A+QRL K     R  KM  IA LL+LP
Sbjct:  723 VQRFLAVDIYQMSLVEPDVSRLGWGVVKFAGLLQDMQVTGVEDDSRALNITIHKP---ASSPHSKPFPILQATFIFSDHIRCIIAKQRLAKGRIQARRMKMQRIAALLDLP 830
The following BLAST results are available for this feature:
BLAST of TCONS_00044866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CL16A4.227e-2750.45Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=1 SV... [more]
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