TCONS_00044863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044863
Unique NameTCONS_00044863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044863 ID=TCONS_00044863|Name=TCONS_00044863|organism=Clytia hemisphaerica|type=transcript|length=400bp
AAACCAGATGAAGAAGAATCAGATTCAAGAAGACAGCTTAATTTTGATAA
GAATCAGCCAGGAACATCGCAAGCTGCACATTCACAAGATCAAAATCCTT
CCAAAACAACTGGAAAGAAGGGAAAAGGATGTCCAAGACCATCATCAAAG
GCAATTGACTTGAGTGTTTCTTCCCCTAAAAGGACTAAGaattatcACAA
GCTAAAGCCACTGACACCAAAGAGAGCCCTTGGTCCGAAGAAATCACTTA
CCCCCAAGAAAACtacaaaaccaaagaaaattcaGGTTAATAATTTTGCC
ACAGCCAGTATTATGCACATAGTAGGCACCCTCCCTTTAAAAAGGGAGGT
TGACTTTTggatcaaaacttttgaaaaaggttGGTAGAAAGAAAATAGGG
Run BLAST on NCBI

protein sequence of TCONS_00044863-protein

>TCONS_00044863-protein ID=TCONS_00044863-protein|Name=TCONS_00044863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
KPDEEESDSRRQLNFDKNQPGTSQAAHSQDQNPSKTTGKKGKGCPRPSSK
AIDLSVSSPKRTKNYHKLKPLTPKRALGPKKSLTPKKTTKPKKIQVNNFA
TASIMHIVGTLPLKREVDFWIKTFEKGW
Run BLAST on NCBI

transcript from alignment at sc0006343:199..1646+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044863 ID=TCONS_00044863|Name=TCONS_00044863|organism=Clytia hemisphaerica|type=transcript|length=1448bp|location=Sequence derived from alignment at sc0006343:199..1646+ (Clytia hemisphaerica)
AAACCAGATGAAGAAGAATCAGATTCAAGAAGACAGCTTAATTTTGATAA
GGTATTAATAGAACTAAACTTTTTATATTGTTGTAGTTTTTAtttgtgtt
ttcaaaaaaataccaGCAGTCCTTTTATCTATGTTTCAAAaggcaatttt
caaaatgtgttttatttttcagaataaaaaaacaataaaatatgtAAATC
TAACATCAGCACCATTGGTCACCATGGATGATGGGGGGTCAAAAGAATAA
TATAAGAAATCTTTTCAGTCATAGAAATATTCTAATGAAGAGAGCAGTCA
ACTTTAGCCAAATTACCCTTGAAAGTTGAGACAGGAAATTTTCATAAAGA
TTTCTGGGAGACAAAATGACTTTGAATTTGAACACTGAGCAACACTGAAA
AGGTGTATTTGCTTGcaaaatagttaaaaaaattataagattCAGAAGTA
ATTTCACAGTCACATTTGCTTGTCAACATNTAAAAAATTATAAGATTCAG
AAGTCATTTCACAGTCACATTTGCTTGTCAACATTTAGAATCAGCCAGGA
ACATCGCAAGCTGCACATTCACAAGATCAAAATCCTTCCAAAACAACTGG
AAAGAAGGGAAAAGTAAAACATCCTTTTTTATTTGCTACTCATTTGCTGA
TTTTTAAGACCTACTATATTGACATGATTTCTTTTCTCAGAATCTTGTCA
AATCACCTTGGGAACTGAATACCTATTACTTATTCTATTTATATGAATTa
aaatattcagttttttaGAATGAAAACTATATGTGCATTATTACTCTTCA
CTATAATTTAATTCCTTTTTTAATAGGGATGTCCAAGACCATCATCAAAG
GCAATTGACTTGAGTGTTTCTTCCCCTAAAAGGACTAAGGTAATACTTAA
ATCAGATTAAGTTTCCCGAGCgagaaaaatcgcgaaattttctggtttta
attttgcgagtcacagatttgaaaattttttcgtagATTTAATTTTGAGA
CTAAGCCTTAAAGCAGCTGAAAAGAGTTTTAATGTTgcgaaaaatggcaa
aaatttgcaaaattgtgaaatttatTCTCGAAAAAAGATAATCCGattaa
attgataaattattttgCCAGTCTTTTTGGCATTAAAATGCCTTTAGAAT
AAATATTTATACTTGAATGATATTAAAATTAAACTACATACTCTTCCCTA
AGCCTAAGTTAAAtggattttttattcaaatttttagaattatcACAAGC
TAAAGCCACTGACACCAAAGAGAGCCCTTGGTCCGAAGAAATCACTTACC
CCCAAGAAAACtacaaaaccaaagaaaattcaGGTTAATAATTTTGCCAC
AGCCAGTATTATGCACATAGTAGGCACCCTCCCTTTAAAAAGGGAGGTTG
ACTTTTggatcaaaacttttgaaaaaggttGGTAGAAAGAAAATAGGG

Coding sequence (CDS) from alignment at sc0006343:199..1646+

>TCONS_00044863 ID=TCONS_00044863|Name=TCONS_00044863|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0006343:199..1646+ (Clytia hemisphaerica)
AAACCAGATGAAGAAGAATCAGATTCAAGAAGACAGCTTAATTTTGATAA
GAATCAGCCAGGAACATCGCAAGCTGCACATTCACAAGATCAAAATCCTT
CCAAAACAACTGGAAAGAAGGGAAAAGGATGTCCAAGACCATCATCAAAG
GCAATTGACTTGAGTGTTTCTTCCCCTAAAAGGACTAAGaattatcACAA
GCTAAAGCCACTGACACCAAAGAGAGCCCTTGGTCCGAAGAAATCACTTA
CCCCCAAGAAAACtacaaaaccaaagaaaattcaGGTTAATAATTTTGCC
ACAGCCAGTATTATGCACATAGTAGGCACCCTCCCTTTAAAAAGGGAGGT
TGACTTTTggatcaaaacttttgaaaaaggttGGTAGAAACCAGATGAAG
AAGAATCAGATTCAAGAAGACAGCTTAATTTTGATAAGAATCAGCCAGGA
ACATCGCAAGCTGCACATTCACAAGATCAAAATCCTTCCAAAACAACTGG
AAAGAAGGGAAAAGGATGTCCAAGACCATCATCAAAGGCAATTGACTTGA
GTGTTTCTTCCCCTAAAAGGACTAAGaattatcACAAGCTAAAGCCACTG
ACACCAAAGAGAGCCCTTGGTCCGAAGAAATCACTTACCCCCAAGAAAAC
tacaaaaccaaagaaaattcaGGTTAATAATTTTGCCACAGCCAGTATTA
TGCACATAGTAGGCACCCTCCCTTTAAAAAGGGAGGTTGACTTTTggatc
aaaacttttgaaaaaggttGGTAGAAACCAGATGAAGAAGAATCAGATTC
AAGAAGACAGCTTAATTTTGATAAGAATCAGCCAGGAACATCGCAAGCTG
CACATTCACAAGATCAAAATCCTTCCAAAACAACTGGAAAGAAGGGAAAA
GGATGTCCAAGACCATCATCAAAGGCAATTGACTTGAGTGTTTCTTCCCC
TAAAAGGACTAAGaattatcACAAGCTAAAGCCACTGACACCAAAGAGAG
CCCTTGGTCCGAAGAAATCACTTACCCCCAAGAAAACtacaaaaccaaag
aaaattcaGGTTAATAATTTTGCCACAGCCAGTATTATGCACATAGTAGG
CACCCTCCCTTTAAAAAGGGAGGTTGACTTTTggatcaaaacttttgaaa
aaggttGGTAGAAACCAGATGAAGAAGAATCAGATTCAAGAAGACAGCTT
AATTTTGATAAGAATCAGCCAGGAACATCGCAAGCTGCACATTCACAAGA
TCAAAATCCTTCCAAAACAACTGGAAAGAAGGGAAAAGGATGTCCAAGAC
CATCATCAAAGGCAATTGACTTGAGTGTTTCTTCCCCTAAAAGGACTAAG
aattatcACAAGCTAAAGCCACTGACACCAAAGAGAGCCCTTGGTCCGAA
GAAATCACTTACCCCCAAGAAAACtacaaaaccaaagaaaattcaGGTTA
ATAATTTTGCCACAGCCAGTATTATGCACATAGTAGGCACCCTCCCTTTA
AAAAGGGAGGTTGACTTTTggatcaaaacttttgaaaaaggttGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028466XLOC_028466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044863-exon-sc0006343-1491911889:199..249TCONS_00044863-exon-sc0006343-1491911889:199..249Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1510915933:199..249TCONS_00044863-exon-sc0006343-1510915933:199..249Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1575043694:199..249TCONS_00044863-exon-sc0006343-1575043694:199..249Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1491911889:737..811TCONS_00044863-exon-sc0006343-1491911889:737..811Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1510915933:737..811TCONS_00044863-exon-sc0006343-1510915933:737..811Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1575043694:737..811TCONS_00044863-exon-sc0006343-1575043694:737..811Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1491911889:1025..1087TCONS_00044863-exon-sc0006343-1491911889:1025..1087Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1510915933:1025..1087TCONS_00044863-exon-sc0006343-1510915933:1025..1087Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1575043694:1025..1087TCONS_00044863-exon-sc0006343-1575043694:1025..1087Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1491911889:1436..1646TCONS_00044863-exon-sc0006343-1491911889:1436..1646Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1510915933:1436..1646TCONS_00044863-exon-sc0006343-1510915933:1436..1646Clytia hemisphaericaexon
TCONS_00044863-exon-sc0006343-1575043694:1436..1646TCONS_00044863-exon-sc0006343-1575043694:1436..1646Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044863-proteinTCONS_00044863-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006343supercontigsc0006343:199..1646 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85747	1.0868	1.26188	0.411516	6.26227	6.53206	2.62688	3.12996	2.66094	2.32659	2.44643	1.73189	2.10009	2.95072	2.10947	1.92422	1.95216	2.0009	2.76435	3.09931	2.15509	3.67913	1.06487	1.35537	0.797715	0.533956	4.83923	3.26183	2.06165	3.57084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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