TCONS_00044856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044856
Unique NameTCONS_00044856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044856 ID=TCONS_00044856|Name=TCONS_00044856|organism=Clytia hemisphaerica|type=transcript|length=482bp
caggaaaaaaactaagaatgcacaaagaaaaaagaaaaataagcgaAACG
ACGGTTTCCCCAAGAAGCACTTCATTTGAATGCAGTAATTGTTCAAAAAA
TGAGGCTCGAAGCAGATGTTCAAGATGTACGGCCGTCAAATATTGCTCCA
AAGAGTGTCAAAAAGATCATTGGGTGAAACATAAAGTACTTTGCAAGGAT
ATCAAATACATGGATCGGCGTTGGCGGAATATAATATCGCCGAGTTACCT
AAAGAAAGTGTATCACCAGCTAGAATGCATATCCCAATGCCCTACTAGTC
TTGTTTTTGACTGTCCGTTGTCGTTTCTGCTCGTTTCGATATCGTTTTCT
TATCACCAACGGAGGCTGTtcctgcaaaatatttttccgatGACTTTCAT
TTTGGTTTCTATAGTAACCAATGCCATCTAACAACATTTTTCGATCTTTT
ACACTGGACCTTTTAATACTATCCATACAAGG
Run BLAST on NCBI

protein sequence of TCONS_00044856-protein

>TCONS_00044856-protein ID=TCONS_00044856-protein|Name=TCONS_00044856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
GKKLRMHKEKRKISETTVSPRSTSFECSNCSKNEARSRCSRCTAVKYCSK
ECQKDHWVKHKVLCKDIKYMDRRWRNIISPSYLKKVYHQLECISQCPTSL
VFDCPLSFLLVSISFSYHQRRLFLQNIFPMTFILVSIVTNAI
Run BLAST on NCBI

transcript from alignment at sc0006329:982..1463

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044856 ID=TCONS_00044856|Name=TCONS_00044856|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at sc0006329:982..1463 (Clytia hemisphaerica)
CCTTGTATGGATAGTATTAAAAGGTCCAGTGTAAAAGATCGAAAAATGTT
GTTAGATGGCATTGGTTACTATAGAAACCAAAATGAAAGTCatcggaaaa
atattttgcaggaACAGCCTCCGTTGGTGATAAGAAAACGATATCGAAAC
GAGCAGAAACGACAACGGACAGTCAAAAACAAGACTAGTAGGGCATTGGG
ATATGCATTCTAGCTGGTGATACACTTTCTTTAGGTAACTCGGCGATATT
ATATTCCGCCAACGCCGATCCATGTATTTGATATCCTTGCAAAGTACTTT
ATGTTTCACCCAATGATCTTTTTGACACTCTTTGGAGCAATATTTGACGG
CCGTACATCTTGAACATCTGCTTCGAGCCTCATTTTTTGAACAATTACTG
CATTCAAATGAAGTGCTTCTTGGGGAAACCGTCGTTtcgcttatttttct
tttttctttgtgcattcttagtttttttcctg

Coding sequence (CDS) from alignment at sc0006329:982..1463

>TCONS_00044856 ID=TCONS_00044856|Name=TCONS_00044856|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0006329:982..1463 (Clytia hemisphaerica)
TTAGATGGCATTGGTTACTATAGAAACCAAAATGAAAGTCatcggaaaaa
tattttgcaggaACAGCCTCCGTTGGTGATAAGAAAACGATATCGAAACG
AGCAGAAACGACAACGGACAGTCAAAAACAAGACTAGTAGGGCATTGGGA
TATGCATTCTAGCTGGTGATACACTTTCTTTAGGTAACTCGGCGATATTA
TATTCCGCCAACGCCGATCCATGTATTTGATATCCTTGCAAAGTACTTTA
TGTTTCACCCAATGATCTTTTTGACACTCTTTGGAGCAATATTTGACGGC
CGTACATCTTGAACATCTGCTTCGAGCCTCATTTTTTGAACAATTACTGC
ATTCAAATGAAGTGCTTCTTGGGGAAACCGTCGTTtcgcttatttttctt
ttttctttgtgcattcttagtttttttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028460XLOC_028460Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044856-proteinTCONS_00044856-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044856-exon-sc0006329-1491911889:982..1463TCONS_00044856-exon-sc0006329-1491911889:982..1463Clytia hemisphaericaexon
TCONS_00044856-exon-sc0006329-1510915933:982..1463TCONS_00044856-exon-sc0006329-1510915933:982..1463Clytia hemisphaericaexon
TCONS_00044856-exon-sc0006329-1575043694:982..1463TCONS_00044856-exon-sc0006329-1575043694:982..1463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006329supercontigsc0006329:982..1463 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03964	0.38018	0.735709	0	4.38129	4.70853	1.16954	2.34624	0.523744	1.70261	1.38234	0.952121	1.16002	0.718059	1.16535	1.55305	1.88733	1.59988	0.414435	0.267267	1.25648	0.9193	1.49004	1.69621	4.83688	7.96957	1.04303	0	0.7212	0.663903
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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