TCONS_00044854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044854
Unique NameTCONS_00044854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044854 ID=TCONS_00044854|Name=TCONS_00044854|organism=Clytia hemisphaerica|type=transcript|length=910bp
TGGGGAGGGAGGACGGGGGGAGGCTGGCAGCAGCCTACCTTCTGCTGAAT
GCCGCAGCCCAGCCAGTCAGCCCCAATACcaatacacaattttttttaaa
cgctGTGCTAGAAAGTTCGTTAACAGTGTATATACTATAGTTTCATGCAT
TTGGATCTAATAAATTGGAGAAATGTCTCTAATTAAACGCTAGGACTAAG
GGCAGGACAGTCTCCATTGGTATCCTCCCTTCTGTTAATGCATTTTTTAA
CTTCAGCTATTCAGCTACTTTATTATGGAATGGTTTTTTAGGTGGAATGA
TTTTGGGGTCTCCaaaccagacggtactaatcaataaattcgattatcga
agtAATTGAACGACCACTTATCAATTAGCAATCAAATTTCGAGcaccaaa
atttcaacaaaattgtGAGTTttcgatcactttcttaacCTTAACTGGTG
GGGAAAAGGGCATAATTTGGAGTTgagtgagtattcgatcacaGATAAAA
TCGATACATAGGTGGTCACTGACCACCTTCGATAATAACCGAACGtttga
ttagtaccgtctggtccAAACAGAACAGAAGGACTTTTGTTAGGAGACTT
TTAGAGGTGTGTGATCAATCTTCTAGTTAATAATTTAACAATAGCCATTT
AGCTACATCTAGCCActataaaaacaacaattaCACAACAATAACAGTAT
CCTTTGGTCACGGTTCAAACAGGCTCAAAACCATATGTTTTCTCGTGCAA
AAAAAGAAGCACTTCAATGTTAGCATAGCAAAAAAACGGGAACCATGATG
AAACCGCCATAGCACCGGGCAATCTaatctcaatcgaatgcaatTTAATC
TCAATGgtacgcaatcgaatatcaatcgaatctggaaattgcggtaatat
tcaattgaga
Run BLAST on NCBI

transcript from alignment at sc0006328:2..1702+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044854 ID=TCONS_00044854|Name=TCONS_00044854|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at sc0006328:2..1702+ (Clytia hemisphaerica)
TGGGGAGGGAGGACGGGGGGAGGCTGGCAGCAGCCTACCTTCTGCTGAAT
GCCGCAGCCCAGCCAGTCAGCCCCAATACcaatacacaattttttttaaa
cgctGTGCTAGAAAGTTCGTTAACAGTGTATATACTATAGTTTCATGCAT
TTGGATCTAATAAATTGGAGAAATGTCTCTAATTAAACGCTAGGACTAAG
GGCAGGACAGTCTCCATTGGTATCCTCCCTTCTGTTAATGCATTTTTTAA
CTTCAGCTATTCAGCTACTTTATTATGGAATGGTTTTTTAGGTGGAATGA
TTTTGGGGTCTCCaaaccagacggtactaatcaataaattcgattatcga
agtAATTGAACGACCACTTATCAATTAGCAATCAAATTTCGAGcaccaaa
atttcaacaaaattgtGAGTTttcgatcactttcttaacCTTAACTGGTG
GGGAAAAGGGCATAATTTGGAGTTgagtgagtattcgatcacaGATAAAA
TCGATACATAGGTGGTCACTGACCACCTTCGATAATAACCGAACGtttga
ttagtaccgtctggtccAAACAGAACAGAAGGACTTTTGTTAGGAGACTT
TTAGAGGTGTGTGATCAATCTTCTAGTTAATAATTTAACAATAGCCATTT
AGCTACATCTAGCCActataaaaacaacaattaCACAACAATAACAGTAT
CCTTTGGTCACGGTTCAAACAGGCTCAAAACCNAATTTAACAATAGCCAT
TTAGCTACATCTAGCCActataaaaacaacaattaCACAACAAtaacagt
tagggaaaccatccaggatcctgccattctagaagccagcaaaaactaaa
tgacacttgtaaacttaagtttcttaccattttccatcgaaaacaaccaa
aaacattgcttcttcccaaagccggagatcaaaacaaattatcttccaag
attatggcgcccttttggatctattgttaaggccatctaaaatggtggaa
agagttgcggaaagacaaaggcgctcGCTGTGgtgagggtggtaacgcca
aaacgcccaatatgatcttccaacagaaggcaagttagttgccgcgcgag
ttacgtcatgcactccaccgcagcgcataacgaagcgtgtttaaatgaat
gtcattaattataagaatatcttatgtgcttactttcagtaaactttgag
tgcttcattgaagatgaagaaggtaagaagataaaaaatgcgctggataa
ttttcaatgtaacagtttgatcaatcatcgctgaaagtttgaaaaagttt
ttccgacgcaaaagaaattgtcagccaattaaaagcacagtgtgcttata
cttactatatttgctacatcgtctaggctaaaaaaagtgcgaaaagacac
gaacgccattttttattgagtgacgttatgatttttttgattgtggctgc
gtacaggaactcgccaaatgttcctaactgaataACAGTATCCTTTGGTC
ACGGTTCAAACAGGCTCAAAACCATATGTTTTCTCGTGCAAAAAAAGAAG
CACTTCAATGTTAGCATAGCAAAAAAACGGGAACCATGATGAAACCGCCA
TAGCACCGGGCAATCTaatctcaatcgaatgcaatTTAATCTCAATGgta
cgcaatcgaatatcaatcgaatctggaaattgcggtaatattcaattgag
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028458XLOC_028458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044854-exon-sc0006328-1491911889:2..723TCONS_00044854-exon-sc0006328-1491911889:2..723Clytia hemisphaericaexon
TCONS_00044854-exon-sc0006328-1510915933:2..723TCONS_00044854-exon-sc0006328-1510915933:2..723Clytia hemisphaericaexon
TCONS_00044854-exon-sc0006328-1575043694:2..723TCONS_00044854-exon-sc0006328-1575043694:2..723Clytia hemisphaericaexon
TCONS_00044854-exon-sc0006328-1491911889:1515..1702TCONS_00044854-exon-sc0006328-1491911889:1515..1702Clytia hemisphaericaexon
TCONS_00044854-exon-sc0006328-1510915933:1515..1702TCONS_00044854-exon-sc0006328-1510915933:1515..1702Clytia hemisphaericaexon
TCONS_00044854-exon-sc0006328-1575043694:1515..1702TCONS_00044854-exon-sc0006328-1575043694:1515..1702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006328supercontigsc0006328:2..1702 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.202441	0.246765	0.343821	0.560625	2.73003	2.80449	1.82189	3.594	2.3883	2.11307	2.87139	4.01103	3.39958	4.05483	0.178159	0.127461	0.0759858	0.233649	0.376598	0	0.0489328	0	0.0580286	0	1.08676	4.80103	0	0.0740619	0.16852	0.114464
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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