TCONS_00044853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044853
Unique NameTCONS_00044853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044853 ID=TCONS_00044853|Name=TCONS_00044853|organism=Clytia hemisphaerica|type=transcript|length=345bp
CCAATTCATATTTCctctttcttatttttctttcttatttttcacCGGAT
GCAGTTGGGAAATCGAGGACACAACCCATCAACTTCAGTATAATGATGTC
TATCTGCTAGCATGCAAGCGAGAACCTGAACCGATGGTCATCTTCCATAG
TTGGAACATGAAGCTTTTCCCAACAGAATATGGCTCTATTCTTGGTAAAC
CCCTGCAAACAATGGAAGTGTTGACGAAAAGCTGGTTCCTTCAGCTTACT
ATCAAATACGAGACGTTTCAAGGAAATGGGGCAACATTTATTTATAGAGA
AGTTGGTGAACTGGACGGAGTGTTTCTTATGTCATGGCCTGAACA
Run BLAST on NCBI

protein sequence of TCONS_00044853-protein

>TCONS_00044853-protein ID=TCONS_00044853-protein|Name=TCONS_00044853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
QFIFPLSYFSFLFFTGCSWEIEDTTHQLQYNDVYLLACKREPEPMVIFHS
WNMKLFPTEYGSILGKPLQTMEVLTKSWFLQLTIKYETFQGNGATFIYRE
VGELDGVFLMSWPE
Run BLAST on NCBI

transcript from alignment at sc0006325:27..1555-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044853 ID=TCONS_00044853|Name=TCONS_00044853|organism=Clytia hemisphaerica|type=transcript|length=1529bp|location=Sequence derived from alignment at sc0006325:27..1555- (Clytia hemisphaerica)
CCAATTCATATTTCCTCTTTCTTATTTTTCTTTCTTATTTTTCACCGGAT
GCAGTTGGGAAATCGAGGACACAACCCATCAACTTCAGTATAATGATGTC
TATCTGCTAGCATGCAAGCGAGAACCTGAACCGATGGTCATCTTCCATAG
TTGGAACATGAAGCTTTTCCCAACAGGTTACTCTCTTTTTTACAGTGTGT
CCTAAAAAAAAAGGACAAATTTTCATATTAAGTAAAATCCTCAAAAAATA
ATGTTTGAAATAGGCTTAGGATATTTGAAATACACGCTTTTTTTGAAAAT
TCTTTTCCTACTGATGATGATCTAAGATTGAAGAATCACTCCTGTGAAAA
TGGTAGTTATACCACTTTTCTATAAGAACTTGATCTTTTTCTTCTTCATT
TTTCATTTTCAATTTGTTTTCCCTAATTTTTACTTGATAATATTCCACTC
ACAAATATCTTTTCAAATAGCACAAAATCGTAACTTGATTCAAATTCTAT
CAAAAGTTACAGCCATTTTTGTCTCAGCTGCAAATTATTTTGAGACAGAT
TTATTTTGAGACAGATTTTAAGATTTTCATTTAAAAATACCGACAGCCGA
AGCTGTACTGAAAAAAAAACCTATTTAAGGGATTTGGAATTTTTCCTTTT
TCGTCTGAATTGTTTAATGTTTACCCATGAACATATCAACATTTCCTTCG
AATACAGATGCTTTTTGGAGAAACTTCAAATTTAGATATTACAATAGTTT
CTTTAACTGGAATGTCTCCTCTCAAATAAGTTTGCTCCGCGTCCCTTCAG
TACACTACCTTACTTATCTAGAAATTAAAACATGCATTGAATTTAGCCAT
TCTAGAAGTCCACGCTTAACTCTGGCCCTCAAGTCTCCTTAGGTTTACTG
AGCTAAAGATAACAGAATTTTTGAATCGTTACCCATCAGAACGGGCGTTT
TTCCAATTCTGTCCCGGGTAGGGGGTACTTAGACAAATTGAGGGTACAGT
ATGTGCCGCCCTTAAGGGTACCTTTTTTGGATCTCCAAAGTCCCGCTAAG
GGTCGGAGAAATCAGAAAATCAAATTTCAGTCCCACTAAAGGTCGGAAAA
ATAGGAAAATTTCAACTTTTTACCCCCGGAAAGATCGAAATTTGGTAAAA
ATTGGTCAAATTTTTCCCGCTAAGGTTCGTAAATTTTCGGTTTTTTCTAT
CCTTTTCAGTCCCGGTAAGGATGAGATCGAAAGTCACCCCCCCCCGTCAG
CTCGCAACCCTAGTACCCCGTCCGGGAATTCTATTTTCAAAAACTGCATT
TCGGCGCTTTCTATATTCCTGACATTTCCTTCAATTGCATTTGTTTTTGT
CGTTTTATAGAATATGGCTCTATTCTTGGTAAACCCCTGCAAACAATGGA
AGTGTTGACGAAAAGCTGGTTCCTTCAGCTTACTATCAAATACGAGACGT
TTCAAGGAAATGGGGCAACATTTATTTATAGAGAAGTTGGTGAACTGGAC
GGAGTGTTTCTTATGTCATGGCCTGAACA

Coding sequence (CDS) from alignment at sc0006325:27..1555-

>TCONS_00044853 ID=TCONS_00044853|Name=TCONS_00044853|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0006325:27..1555- (Clytia hemisphaerica)
AATATGGCTCTATTCTTGGTAAACCCCTGCAAACAATGGAAGTGTTGACG
AAAAGCTGGTTCCTTCAGCTTACTATCAAATACGAGACGTTTCAAGGAAA
TGGGGCAACATTTATTTATAGAGAAGTTGGTGAACTGGACGGAGTGTTTC
TTATGTCATGGCCTGAACAATTCATATTTCCTCTTTCTTATTTTTCTTTC
TTATTTTTCACCGGATGCAGTTGGGAAATCGAGGACACAACCCATCAACT
TCAGTATAATGATGTCTATCTGCTAGCATGCAAGCGAGAACCTGAACCGA
TGGTCATCTTCCATAGTTGGAACATGAAGCTTTTCCCAACAGAATATGGC
TCTATTCTTGGTAAACCCCTGCAAACAATGGAAGTGTTGACGAAAAGCTG
GTTCCTTCAGCTTACTATCAAATACGAGACGTTTCAAGGAAATGGGGCAA
CATTTATTTATAGAGAAGTTGGTGAACTGGACGGAGTGTTTCTTATGTCA
TGGCCTGAACAATTCATATTTCCTCTTTCTTATTTTTCTTTCTTATTTTT
CACCGGATGCAGTTGGGAAATCGAGGACACAACCCATCAACTTCAGTATA
ATGATGTCTATCTGCTAGCATGCAAGCGAGAACCTGAACCGATGGTCATC
TTCCATAGTTGGAACATGAAGCTTTTCCCAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028457XLOC_028457Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044853-proteinTCONS_00044853-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044853-exon-sc0006325-1575043694:1380..1555TCONS_00044853-exon-sc0006325-1575043694:1380..1555Clytia hemisphaericaexon
TCONS_00044853-exon-sc0006325-1575043694:27..195TCONS_00044853-exon-sc0006325-1575043694:27..195Clytia hemisphaericaexon
TCONS_00044853-exon-sc0006325-1510915933:1380..1555TCONS_00044853-exon-sc0006325-1510915933:1380..1555Clytia hemisphaericaexon
TCONS_00044853-exon-sc0006325-1510915933:27..195TCONS_00044853-exon-sc0006325-1510915933:27..195Clytia hemisphaericaexon
TCONS_00044853-exon-sc0006325-1491911889:1380..1555TCONS_00044853-exon-sc0006325-1491911889:1380..1555Clytia hemisphaericaexon
TCONS_00044853-exon-sc0006325-1491911889:27..195TCONS_00044853-exon-sc0006325-1491911889:27..195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006325supercontigsc0006325:27..1555 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.861965	0	0.94686	0	4.00745	7.00218	0.565976	0.837204	0.444966	0	5.38613	7.34206	1.62329	0	0.732322	1.3025	1.56176	1.89901	0.357698	0.0871488	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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