TCONS_00044836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044836
Unique NameTCONS_00044836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044836 ID=TCONS_00044836|Name=TCONS_00044836|organism=Clytia hemisphaerica|type=transcript|length=267bp
NNGGGTCCGTGGTTGGGCGGGGACACTGGGGTTAGGGCGCTATACGTGAC
ATCTTTCTCACAGTGTCTGGGACCTCCATGATGGGTGTTTCCCCTTGCAG
GTATCCAAGCCTTCTCCATATTAAAGGGTATTAGTTTAATGGCAAAAGGC
AAGTTTGCATCAATCGTTCTCCCTGAAGAGGGACACGGGCCCAGTTAAAC
AGTCATGAATTATGATGAAAGAATGTCTTCTTGATTCACGtctatattat
ataaaaaattatttgtc
Run BLAST on NCBI

transcript from alignment at sc0006290:2..268

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044836 ID=TCONS_00044836|Name=TCONS_00044836|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at sc0006290:2..268 (Clytia hemisphaerica)
gacaaataattttttatataatatagaCGTGAATCAAGAAGACATTCTTT
CATCATAATTCATGACTGTTTAACTGGGCCCGTGTCCCTCTTCAGGGAGA
ACGATTGATGCAAACTTGCCTTTTGCCATTAAACTAATACCCTTTAATAT
GGAGAAGGCTTGGATACCTGCAAGGGGAAACACCCATCATGGAGGTCCCA
GACACTGTGAGAAAGATGTCACGTATAGCGCCCTAACCCCAGTGTCCCCG
CCCAACCACGGACCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028441XLOC_028441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044836-exon-sc0006290-1491911889:2..268TCONS_00044836-exon-sc0006290-1491911889:2..268Clytia hemisphaericaexon
TCONS_00044836-exon-sc0006290-1510915933:2..268TCONS_00044836-exon-sc0006290-1510915933:2..268Clytia hemisphaericaexon
TCONS_00044836-exon-sc0006290-1575043694:2..268TCONS_00044836-exon-sc0006290-1575043694:2..268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006290supercontigsc0006290:2..268 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.36673	0.576983	0.746607	1.31085	0	0	1.5214	2.13648	1.19374	1.73989	8.19382	2.30066	6.41035	6.32199	4.09534	2.60107	2.53237	3.98765	3.06454	0.658173	1.84373	2.71088	0.0234192	1.95036	10.1642	7.9374	2.08654	6.17455	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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