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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044823 ID=TCONS_00044823|Name=TCONS_00044823|organism=Clytia hemisphaerica|type=transcript|length=1684bp
CTTTTGCTTAAAATGAGTCAAACTTTTTTTACTCGAAACTGCATTCAACT
CCTGATCGTTGACTCGATTTCCTACTGGCTCCAATTTTATTCCTTTGTAc
gttggcgaggtcgccattttgagagaATATGTCAAAAATCCTCATaccaa
taaaactacttggagttggacgatataatcaaaaatgagaaacaacccaa
ctggcacacaacgttgtttcaacgttaatctagcgttaaatggacgttgt
gaacgttagattaacgttgaaacaacgctgtgtgccagctgggaacatca
ataaaatttttaacattttttatttgcaatcccttattctcaatgttttt
aaatgattcatactgtttttaccttcctaaaacaactaaaatctgtaaaa
cagtccgccttaagcaaaagcatattaccatatactactagaccacttaa
tcgcgccatccaatctataaaaaaagctcTAAGTGGACCCCGGACTTAAC
ATTCTGCGACTGTTTGATGTCAATTTGAAAAATGCCCTcctaaacaaaac
aaaattactttttacGTAAATGACCCCAGGTAAAAACTGTTGGAAAAGGA
CTCGAAAATGTggatattttaaaatattccaacccagctggcacgcaacg
ttCTTTTAACGTTAATCTAATgtccacaacgtccatataacgttagatga
acgttgtaaCAACGGTGCGTGTCAGATGCCAATACATTTgataatgtttt
ttattttttaacactCATTTAAACTAACCGAAAGTTTAAACGAAAATTAA
ATGTCCATAATGCTTAGCTCCGTCCGCCAGCCCACCGACTGCCCGCCTTT
ACTGCCCGATTCACAATTCCATTGTACTCACCTGCATTCTATTTTCTTTC
TTCCTTAGTTTCGCTTACCTGATGGTAGAACCTTGAATTCCAATTTCAAT
GCCAGTGACACTTTGTTCACGGTTCACGAGTACGTCTCCAAAAATCGGAC
GGACGGGCGGACGGAGGACGTTTTTACTCTATCCACGACTTTTCCACGAA
AGACTTTCAATGACGATCACatgttaaaatctttaaaagaattaGGCTTA
GTGCCTTCGTCGGTTTTAGTTTTGGGTAAAGTTGCTTGATTTCATGTTTG
GTGCATAACACTTGGTTAGAATATTACATTTGGACATCTGGCTCGTTTGT
CACTGTTTTGAATTAGCTAGCATTTTTTTATTACCTTTTGATAGTTTAAA
TGCTGATCACACAGTTTAAATTTACATGTCAAATTTTACCttggtttaaa
aattttggCTGCGTGATGGAACGGTTTTGAATTGCTTGaatgtaattttt
atttttaagttatATGGTAATTTGtatctttgtaaaaaaatacaaattta
aattatttttcgcaAAGGAATTAGTTTAAGATTTATTTcgaatttaaaac
tttttctgatttttttgttcGAGATATTATTATATACCATCGGAAAGTTC
CAAGAAAACAGACACACAGAATCTTTTACTTTAGGCAAATATTTTTACAG
ACATTTTTATAGACATTTTCACCTCCAAAAGGTGAAAATATGCAAGAAGG
AGGCCTGAAAGAGGCCAAGAAGACCTCTAAGAGGAGCCATGTAAACCatg
taaaataatttgaataaaatagaCCGGCCATAAC Run BLAST on NCBI transcript from alignment at sc0006279:261..1944 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044823 ID=TCONS_00044823|Name=TCONS_00044823|organism=Clytia hemisphaerica|type=transcript|length=1684bp|location=Sequence derived from alignment at sc0006279:261..1944 (Clytia hemisphaerica)
GTTATGGCCGGtctattttattcaaattattttacatGGTTTACATGGCT
CCTCTTAGAGGTCTTCTTGGCCTCTTTCAGGCCTCCTTCTTGCATATTTT
CACCTTTTGGAGGTGAAAATGTCTATAAAAATGTCTGTAAAAATATTTGC
CTAAAGTAAAAGATTCTGTGTGTCTGTTTTCTTGGAACTTTCCGATGGTA
TATAATAATATCTCgaacaaaaaaatcagaaaaagttttaaattcgAAAT
AAATCTTAAACTAATTCCTTtgcgaaaaataatttaaatttgtatttttt
tacaaagataCAAATTACCATataacttaaaaataaaaattacattCAAG
CAATTCAAAACCGTTCCATCACGCAGccaaaatttttaaaccaaGGTAAA
ATTTGACATGTAAATTTAAACTGTGTGATCAGCATTTAAACTATCAAAAG
GTAATAAAAAAATGCTAGCTAATTCAAAACAGTGACAAACGAGCCAGATG
TCCAAATGTAATATTCTAACCAAGTGTTATGCACCAAACATGAAATCAAG
CAACTTTACCCAAAACTAAAACCGACGAAGGCACTAAGCCtaattctttt
aaagattttaacatGTGATCGTCATTGAAAGTCTTTCGTGGAAAAGTCGT
GGATAGAGTAAAAACGTCCTCCGTCCGCCCGTCCGTCCGATTTTTGGAGA
CGTACTCGTGAACCGTGAACAAAGTGTCACTGGCATTGAAATTGGAATTC
AAGGTTCTACCATCAGGTAAGCGAAACTAAGGAAGAAAGAAAATAGAATG
CAGGTGAGTACAATGGAATTGTGAATCGGGCAGTAAAGGCGGGCAGTCGG
TGGGCTGGCGGACGGAGCTAAGCATTATGGACATTTAATTTTCGTTTAAA
CTTTCGGTTAGTTTAAATGagtgttaaaaaataaaaaacattatcAAATG
TATTGGCATCTGACACGCACCGTTGttacaacgttcatctaacgttatat
ggacgttgtggacATTAGATTAACGTTAAAAGaacgttgcgtgccagctg
ggttggaatattttaaaatatccACATTTTCGAGTCCTTTTCCAACAGTT
TTTACCTGGGGTCATTTACgtaaaaagtaattttgttttgtttaggAGGG
CATTTTTCAAATTGACATCAAACAGTCGCAGAATGTTAAGTCCGGGGTCC
ACTTAgagctttttttatagattggatggcgcgattaagtggtctagtag
tatatggtaatatgcttttgcttaaggcggactgttttacagattttagt
tgttttaggaaggtaaaaacagtatgaatcatttaaaaacattgagaata
agggattgcaaataaaaaatgttaaaaattttattgatgttcccagctgg
cacacagcgttgtttcaacgttaatctaacgttcacaacgtccatttaac
gctagattaacgttgaaacaacgttgtgtgccagttgggttgtttctcat
ttttgattatatcgtccaactccaagtagttttattggtATGAGGATTTT
TGACATATtctctcaaaatggcgacctcgccaacgTACAAAGGAATAAAA
TTGGAGCCAGTAGGAAATCGAGTCAACGATCAGGAGTTGAATGCAGTTTC
GAGTAAAAAAAGTTTGACTCATTTTAAGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044823-exon-sc0006279-1491911889:261..1944 | TCONS_00044823-exon-sc0006279-1491911889:261..1944 | Clytia hemisphaerica | exon |
| TCONS_00044823-exon-sc0006279-1510915933:261..1944 | TCONS_00044823-exon-sc0006279-1510915933:261..1944 | Clytia hemisphaerica | exon |
| TCONS_00044823-exon-sc0006279-1575043694:261..1944 | TCONS_00044823-exon-sc0006279-1575043694:261..1944 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006279 | supercontig | sc0006279:261..1944 . |
Blast
The following BLAST results are available for this feature:
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