TCONS_00044808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044808
Unique NameTCONS_00044808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044808 ID=TCONS_00044808|Name=TCONS_00044808|organism=Clytia hemisphaerica|type=transcript|length=510bp
TACAGAATATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGAAGATTTT
GGAACAGCTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGACTGAGAA
CTCCAGATATTCTAGATTCGTTCCCGGCAAGCCTTGGGTCATTTTCGAAG
CATTTCAAATCTTACtgaaagaacaagttaagaaattGATCGAAATCGGA
GTTGATCCAAATATTGATTATGTTGTCCACCAATTATGGATTCATTTTCT
TCGAGTCAACAGAATAGCTTTCCATCCCAATGAACGAGAAACTGTTGATC
TTCGCAAGTCAAAACACACCGGAAGATCGCATAAAATTTCCAAGTTCAGT
TTCCTGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTTATTAGA
CGACGAAGCAGATGAACATGAATCCGATTTTGAATCCGATTTTGAAGATG
ATGATCCGATGGACGAAAAATCGGATAAAACAGAGGAGAATTGTAATCCT
GATGGTGAAG
Run BLAST on NCBI

protein sequence of TCONS_00044808-protein

>TCONS_00044808-protein ID=TCONS_00044808-protein|Name=TCONS_00044808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
QNMQVEIEEAGFREDFGTAGPIIKTKKGGVTENSRYSRFVPGKPWVIFEA
FQILLKEQVKKLIEIGVDPNIDYVVHQLWIHFLRVNRIAFHPNERETVDL
RKSKHTGRSHKISKFSFLGKRKTERKLGRTLLDDEADEHESDFESDFEDD
DPMDEKSDKTEENCNPDGE
Run BLAST on NCBI

transcript from alignment at sc0006247:1..1959-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044808 ID=TCONS_00044808|Name=TCONS_00044808|organism=Clytia hemisphaerica|type=transcript|length=1959bp|location=Sequence derived from alignment at sc0006247:1..1959- (Clytia hemisphaerica)
TACAGAATATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGAAGATTTT
GGAACAGCTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGACTGAGAA
CTCCAGATATTCTAGTAAGTCTAGATCTTCTATATAATTTCCATATGATT
GTTAATATTGCGGTGTTGATAGATTATAGTTAAGAAATACAATACAATTA
GTCTGGCTGTAATTTATACTATATCACATCAAAAGGCAAAACTGAGAAAC
TGTATATACACCTTTTCGACCGTAGCCGCCAAGTCCTTTTTTGACATGAC
ACATTTTTCTATTGTCTATAGGTGCGAAAAAAGGACTGGGACGGTTTTAG
TGGGATAAAAATGCCCACGCGGCAATTGGCGGCTACGGTCAAAAAGGTGT
ATTACTAGGGCCAGAACATTGACATATTTCAGGGTGCTGGTCTAAGAGTT
TCTTTCAAGTCGTGTGTTTTCTCGTTTCTTGTATATGTGCTATTTGAGCT
GGTCTACGACGTCTTCTTGATTAGGATTCGTTCCCGGCAAGCCTTGGGTC
ATTTTCGAAGCATTTCAAATCTTACTGAAAGAACAAGTTAAGAAATTGAT
CGAAATCGGAGTTGATCCAAATATTGATGTAAGTATGACATCTTCCCATT
TTCCTCTATATATTGTATTGAAATACTTTTTTGCATCCAATCTTTGCAGA
GGATATCATATTTGAAGATAAAAGACACGTATCCACGATTTAAGATCATG
CTAAGACGTTACGGTCCCGTTCCGTTTCGAAACGAAATGGTTCCGTAACA
AGTGTGAACATCAAAATTCGAAACGTCAAAAAATGATGTTACAAAGATGT
TACAAAGCAAAACAGATCGAAACGGTTATTTCGCTTCACTTTTTTCATTG
GAACGGAACTGCCCCGTTTTCTCGCTCCGAAACGTTCCGAAACAATTATG
AAAATATTCGTTCCGTAACGAAAATCATACCGGAGCGAAACGGAACGGTG
ACGCGTGTCCACGACTTGGTTTCCTATCTTTTACACGACTTGATACTTCA
GAGCACTGAAGTCTTGCTACAAATTACTACCTTACTGGAACAAATTTTTG
TGGGAATTAATTTTGGCGTTTTTCGCGGTTTTTCGGCAAAACCGCAAAAA
TTTAAACCCGCGAAATACAATTTTTCCAATGTTATCGAAAAATTTGAAAT
ATTTCCTCTTTTAGTATGTTGTCCACCAATTATGGATTCATTTTCTTCGA
GTCAACAGAATAGCTTTCCATCCCAATGAACGAGAAACTGTTGATCTTCG
CAAGTCAAAACACACCGGAAGATCGCATAAAATTTCCAAGTTCAGTTTCC
TGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTTATTAGGTTTG
TGATGTGTCCATTTTATTCTTTCAATTTTTCTCAATTTCTTTTCTCAGGA
CAGAATTCACTATCCTAGGTTAAGGGACATCACTGCGTTTATCTGACTCT
GCCGACTCTGGTTCGCGTGTTTAAAGCCTGTTTAAAAAGCGAATTTTAAC
TTAAAAAGCTTGTATAACTTAAAAAGCTTATATAACTTGACCAAAGTCAA
AAAAAAAATCTACACCTTAAGATTTAAATCTAAGAAAAGTTTGAAAATCT
CTCATGGATCAAAACACTACCCTCAACATAATACCAACAAATATGATACA
AAATTTCTATTCTAAGTTAGACTATCCTCTAATCTGAAAAAAAAACATAA
CAAGTTTTTTTGAACTATCTATTTGAACTATTATTTCAAACATTGTTTAA
ATTAACGGCCCAAAAAGGAAATTCCTATTTTCCCGATCATTTTTTCAGAC
GACGAAGCAGATGAACATGAATCCGATTTTGAATCCGATTTTGAAGATGA
TGATCCGATGGACGAAAAATCGGATAAAACAGAGGAGAATTGTAATCCTG
ATGGTGAAG

Coding sequence (CDS) from alignment at sc0006247:1..1959-

>TCONS_00044808 ID=TCONS_00044808|Name=TCONS_00044808|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at sc0006247:1..1959- (Clytia hemisphaerica)
ACGACGAAGCAGATGAACATGAATCCGATTTTGAATCCGATTTTGAAGAT
GATGATCCGATGGACGAAAAATCGGATAAAACAGAGGAGAATTGTAATCC
TGATGGTGAATATGTTGTCCACCAATTATGGATTCATTTTCTTCGAGTCA
ACAGAATAGCTTTCCATCCCAATGAACGAGAAACTGTTGATCTTCGCAAG
TCAAAACACACCGGAAGATCGCATAAAATTTCCAAGTTCAGTTTCCTGGG
TAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTTATTAGGATTCGTTC
CCGGCAAGCCTTGGGTCATTTTCGAAGCATTTCAAATCTTACTGAAAGAA
CAAGTTAAGAAATTGATCGAAATCGGAGTTGATCCAAATATTGATCAGAA
TATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGAAGATTTTGGAACAG
CTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGACTGAGAACTCCAGA
TATTCTAACGACGAAGCAGATGAACATGAATCCGATTTTGAATCCGATTT
TGAAGATGATGATCCGATGGACGAAAAATCGGATAAAACAGAGGAGAATT
GTAATCCTGATGGTGAATATGTTGTCCACCAATTATGGATTCATTTTCTT
CGAGTCAACAGAATAGCTTTCCATCCCAATGAACGAGAAACTGTTGATCT
TCGCAAGTCAAAACACACCGGAAGATCGCATAAAATTTCCAAGTTCAGTT
TCCTGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTTATTAGGA
TTCGTTCCCGGCAAGCCTTGGGTCATTTTCGAAGCATTTCAAATCTTACT
GAAAGAACAAGTTAAGAAATTGATCGAAATCGGAGTTGATCCAAATATTG
ATCAGAATATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGAAGATTTT
GGAACAGCTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGACTGAGAA
CTCCAGATATTCTAACGACGAAGCAGATGAACATGAATCCGATTTTGAAT
CCGATTTTGAAGATGATGATCCGATGGACGAAAAATCGGATAAAACAGAG
GAGAATTGTAATCCTGATGGTGAATATGTTGTCCACCAATTATGGATTCA
TTTTCTTCGAGTCAACAGAATAGCTTTCCATCCCAATGAACGAGAAACTG
TTGATCTTCGCAAGTCAAAACACACCGGAAGATCGCATAAAATTTCCAAG
TTCAGTTTCCTGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTT
ATTAGGATTCGTTCCCGGCAAGCCTTGGGTCATTTTCGAAGCATTTCAAA
TCTTACTGAAAGAACAAGTTAAGAAATTGATCGAAATCGGAGTTGATCCA
AATATTGATCAGAATATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGA
AGATTTTGGAACAGCTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGA
CTGAGAACTCCAGATATTCTAACGACGAAGCAGATGAACATGAATCCGAT
TTTGAATCCGATTTTGAAGATGATGATCCGATGGACGAAAAATCGGATAA
AACAGAGGAGAATTGTAATCCTGATGGTGAATATGTTGTCCACCAATTAT
GGATTCATTTTCTTCGAGTCAACAGAATAGCTTTCCATCCCAATGAACGA
GAAACTGTTGATCTTCGCAAGTCAAAACACACCGGAAGATCGCATAAAAT
TTCCAAGTTCAGTTTCCTGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCC
GCACTTTATTAGGATTCGTTCCCGGCAAGCCTTGGGTCATTTTCGAAGCA
TTTCAAATCTTACTGAAAGAACAAGTTAAGAAATTGATCGAAATCGGAGT
TGATCCAAATATTGATCAGAATATGCAAGTAGAAATTGAAGAGGCAGGAT
TTCGTGAAGATTTTGGAACAGCTGGACCTATTATAAAAACCAAGAAAGGT
GGTGTGACTGAGAACTCCAGATATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028417XLOC_028417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044808-exon-sc0006247-1575043694:1846..1959TCONS_00044808-exon-sc0006247-1575043694:1846..1959Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1575043694:1332..1435TCONS_00044808-exon-sc0006247-1575043694:1332..1435Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1575043694:565..745TCONS_00044808-exon-sc0006247-1575043694:565..745Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1575043694:1..111TCONS_00044808-exon-sc0006247-1575043694:1..111Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1510915933:1846..1959TCONS_00044808-exon-sc0006247-1510915933:1846..1959Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1510915933:1332..1435TCONS_00044808-exon-sc0006247-1510915933:1332..1435Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1510915933:565..745TCONS_00044808-exon-sc0006247-1510915933:565..745Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1510915933:1..111TCONS_00044808-exon-sc0006247-1510915933:1..111Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1491911889:1846..1959TCONS_00044808-exon-sc0006247-1491911889:1846..1959Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1491911889:1332..1435TCONS_00044808-exon-sc0006247-1491911889:1332..1435Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1491911889:565..745TCONS_00044808-exon-sc0006247-1491911889:565..745Clytia hemisphaericaexon
TCONS_00044808-exon-sc0006247-1491911889:1..111TCONS_00044808-exon-sc0006247-1491911889:1..111Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044808-proteinTCONS_00044808-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006247supercontigsc0006247:1..1959 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51145	0	0.211903	0.491134	1.02218	0	0.902789	1.23967	0.405247	1.08	1.17401	0.751095	1.05683	0.689159	0.331983	1.22436	0.1226	1.14789	0.189668	0.160744	0.178077	0.283766	1.21827	0.240839	3.13247	2.2748	0.195675	1.66962	0.787206	2.1948
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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