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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044800 ID=TCONS_00044800|Name=TCONS_00044800|organism=Clytia hemisphaerica|type=transcript|length=830bp
AAATTGaatttcatctgaaaaaaactatttcggccatccgccaaattgaa
ttcccgccaaaatctCTTTCCTTCAGGTAAATTATTTTCTGTTGTAAACA
TTTCCCGTGTTTTCTTTCCTGAAGGAATCCAATCCAAGACGTGTCACGAA
GAAAGAACGAGACGCTGACAAATTGAATGCTCTTCGCACGAAAAGTAACT
CCGGTCGAAACCTATCGCGCTACGAACGCAACGAGTTACGGCGTTTAGAG
CAAGACGAACGGATACAGCACCGTATTGACCGTAAGAAAAGCCGCATGAA
GAACAACTGTCTTGGTAAAGCTCAACGTATTTTGAAACCATTCGAAGTTG
TGTTTGGTTTTGCATTCTTGGCAATTTCATTGTTGATGATGGTTTCGTTG
ACCATCACTAATGTCGACAAAGAATTGAACTCGTTGGGTTACAAGCAAGG
GTACTCGCTCCCAGTCCCCCAACTACAAAACCCTGTTAATATCATTATGG
TGCATGCTTCTAAGGTATATAATGATTTCTTTCAATGTTCTTGGCGTCAA
TAAGTTGGTATTAATTAGTATTTTATTAATACCATCTCacacaaatatta
aattaaTCTGCAataagaaaaatggaaaagtgAAGAATTGTTTTTTGGCA
TTCAGTCATTGGAGAGCGCTAGAATACCGAAAGCATCCAGCGAGgacctt
ttttttaaacatctgttccccaggcatagccttcctggaaaatttgatct
gttggccaaaactttcaaaaatcttgttcctagaaatgaagatctgcttc
tcctcaaaacctaaattttaaatctcaaag Run BLAST on NCBI transcript from alignment at sc0006240:663..1751+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044800 ID=TCONS_00044800|Name=TCONS_00044800|organism=Clytia hemisphaerica|type=transcript|length=1089bp|location=Sequence derived from alignment at sc0006240:663..1751+ (Clytia hemisphaerica)
AAATTGaatttcatctgaaaaaaactatttcggccatccgccaaattgaa
ttcccgccaaaatctCTTTCCTTCAGGTAAATTATTTTCTGTTGTAAACA
TTTCCCGTGTTTTCTTTCCTGAAGGAATCCAATCCAAGACGTGTCACGAA
GAAAGAACGAGACGCTGACAAATTGAATGCTCTTCGCACGAAAAGTAACT
CCGGTCGAAACCTATCGCGCTACGAACGCAACGAGTTACGGCGTTTAGAG
CAAGACGAACGGATACAGCACCGTATTGACCGTAAGAAAAGCCGCATGAA
GAACAACTGTCTTGGTAAAGCTCAACGTATTTTGAAACCATTCGAAGTTG
TGTTTGGTTTTGCATTCTTGGCAATTTCATTGTTGATGATGGTTTCGTTG
ACCATCACTAAGTATGTTAATCACTTTAGTGTCTTTATTTACCTTGTGGA
ATGAGAAATCTACCATAAGAGTGCTTTCTTGATTTACTTTCAAAGTTCCA
TTCAGATTCTGAGTTGTTGTTAAGATTCCCTGTACGATGTCTTGTCTCTC
TATATATTTTTCGATGTATTAAAGATATAAGAGCAACTAGAACTATTTTC
ACTCACCCGAGTCGCATTGAACAATCGAAAAAAACgtgttttatttcttt
tatgaTCTTTCCTTTTCCAGTGTCGACAAAGAATTGAACTCGTTGGGTTA
CAAGCAAGGGTACTCGCTCCCAGTCCCCCAACTACAAAACCCTGTTAATA
TCATTATGGTGCATGCTTCTAAGGTATATAATGATTTCTTTCAATGTTCT
TGGCGTCAATAAGTTGGTATTAATTAGTATTTTATTAATACCATCTCaca
caaatattaaattaaTCTGCAataagaaaaatggaaaagtgAAGAATTGT
TTTTTGGCATTCAGTCATTGGAGAGCGCTAGAATACCGAAAGCATCCAGC
GAGgaccttttttttaaacatctgttccccaggcatagccttcctggaaa
atttgatctgttggccaaaactttcaaaaatcttgttcctagaaatgaag
atctgcttctcctcaaaacctaaattttaaatctcaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044800-exon-sc0006240-1491911889:663..1073 | TCONS_00044800-exon-sc0006240-1491911889:663..1073 | Clytia hemisphaerica | exon |
| TCONS_00044800-exon-sc0006240-1510915933:663..1073 | TCONS_00044800-exon-sc0006240-1510915933:663..1073 | Clytia hemisphaerica | exon |
| TCONS_00044800-exon-sc0006240-1575043694:663..1073 | TCONS_00044800-exon-sc0006240-1575043694:663..1073 | Clytia hemisphaerica | exon |
| TCONS_00044800-exon-sc0006240-1491911889:1333..1751 | TCONS_00044800-exon-sc0006240-1491911889:1333..1751 | Clytia hemisphaerica | exon |
| TCONS_00044800-exon-sc0006240-1510915933:1333..1751 | TCONS_00044800-exon-sc0006240-1510915933:1333..1751 | Clytia hemisphaerica | exon |
| TCONS_00044800-exon-sc0006240-1575043694:1333..1751 | TCONS_00044800-exon-sc0006240-1575043694:1333..1751 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006240 | supercontig | sc0006240:663..1751 + |
Blast
The following BLAST results are available for this feature:
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