TCONS_00044786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044786
Unique NameTCONS_00044786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044786 ID=TCONS_00044786|Name=TCONS_00044786|organism=Clytia hemisphaerica|type=transcript|length=327bp
ACCGGTATATATAGACAACTGTGGAAAGACATGCTTAACAATCATCCCTA
ATACATCAAGTGGTTTTAGGCTTTTGGTTGATTCAATCCATACCGTTCGT
TATATAGCAATAGATCCATCTGGAAACAGTAATGAAGAATGTGTTTTCAC
TGTTGAAGTCAAAAGAAAAGTTCATGCTTGTCCACCGTTAAAAGCTCCAC
TGAATGGTGCTGTTGTATACAACAATAAGATGAGCCTTGCACAGGTTTAT
GGCAGACAAGGATTCTACCCAGttagaaaaattgcatttctgtATGTTTG
TATAAATGGTCAATGGAAAGACGTAAT
Run BLAST on NCBI

protein sequence of TCONS_00044786-protein

>TCONS_00044786-protein ID=TCONS_00044786-protein|Name=TCONS_00044786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
PVYIDNCGKTCLTIIPNTSSGFRLLVDSIHTVRYIAIDPSGNSNEECVFT
VEVKRKVHACPPLKAPLNGAVVYNNKMSLAQVYGRQGFYPVRKIAFLYVC
INGQWKDV
Run BLAST on NCBI

transcript from alignment at sc0006210:1301..2200-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044786 ID=TCONS_00044786|Name=TCONS_00044786|organism=Clytia hemisphaerica|type=transcript|length=900bp|location=Sequence derived from alignment at sc0006210:1301..2200- (Clytia hemisphaerica)
ACCGGTATATATAGACAACTGTGGAAAGACATGCTTAACAATCATCCCTA
ATACATCAAGTGGTTTTAGGCTTTTGGTTGATTCAATCCATACCGTTCGT
TATATAGCAATAGATCCATCTGGAAACAGTAATGAAGAATGTGTTTTCAC
TGTTGAAGTCAAAAGAAAAGGTACTCGAAAAGACTAAGGCTTTAAGATCT
AATTTCCTTGCCATCAAAGTAATGGAGACTTATAAAAATATTTAGACAGT
TGGAAAGATGGATGTGTTTGAGGAGAATAAACTATCTTTGACGCATGTTG
ATTCGATTATTAATGGGAATCGGATTTTCATCGAATAAGGGAACGTATGG
AATAGTAGTGTGTCTTTTGTGAGAGTTTTTCGTTGACGATGACTTTCAAT
ATCATCAAATAATGTAGTGCATCGAATGTAAAACTTTTTGGGCTGTTCCA
TTAAAACAACGTCCGGGGGGGGGGGGGGGCTGGAAGAACGTTTCAAGTAA
AAAAAAATGTCTCAAAAAATTGCAAAAATATGGGAAAAAAATTTTCATAC
CTTAAAGTGAGGGTAGACGAACTACAATCAGCCTTTTACACCCTGGAAAC
TTTAGAATAAATATTTACACCCTCTCTGGAAACTTTCTCGGATTACCTTC
TCCTTCGTCCACCCCTTGTATGGATATCAAATAGAATGGCCAATTAGAGC
GTCAATTGTAATAATGATTTCCTTTTCTTTATGCTACTACTAGTTCATGC
TTGTCCACCGTTAAAAGCTCCACTGAATGGTGCTGTTGTATACAACAATA
AGATGAGCCTTGCACAGGTTTATGGCAGACAAGGATTCTACCCAGTTAGA
AAAATTGCATTTCTGTATGTTTGTATAAATGGTCAATGGAAAGACGTAAT

Coding sequence (CDS) from alignment at sc0006210:1301..2200-

>TCONS_00044786 ID=TCONS_00044786|Name=TCONS_00044786|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0006210:1301..2200- (Clytia hemisphaerica)
TTCATGCTTGTCCACCGTTAAAAGCTCCACTGAATGGTGCTGTTGTATAC
AACAATAAGATGAGCCTTGCACAGGTTTATGGCAGACAAGGATTCTACCC
AGTTAGAAAAATTGCATTTCTGTATGTTTGTATAAATGGTCAATGGAAAG
ACGTACCGGTATATATAGACAACTGTGGAAAGACATGCTTAACAATCATC
CCTAATACATCAAGTGGTTTTAGGCTTTTGGTTGATTCAATCCATACCGT
TCGTTATATAGCAATAGATCCATCTGGAAACAGTAATGAAGAATGTGTTT
TCACTGTTGAAGTCAAAAGAAAAGTTCATGCTTGTCCACCGTTAAAAGCT
CCACTGAATGGTGCTGTTGTATACAACAATAAGATGAGCCTTGCACAGGT
TTATGGCAGACAAGGATTCTACCCAGTTAGAAAAATTGCATTTCTGTATG
TTTGTATAAATGGTCAATGGAAAGACGTACCGGTATATATAGACAACTGT
GGAAAGACATGCTTAACAATCATCCCTAATACATCAAGTGGTTTTAGGCT
TTTGGTTGATTCAATCCATACCGTTCGTTATATAGCAATAGATCCATCTG
GAAACAGTAATGAAGAATGTGTTTTCACTGTTGAAGTCAAAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028397XLOC_028397Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044786-proteinTCONS_00044786-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044786-exon-sc0006210-1575043694:2031..2200TCONS_00044786-exon-sc0006210-1575043694:2031..2200Clytia hemisphaericaexon
TCONS_00044786-exon-sc0006210-1575043694:1301..1457TCONS_00044786-exon-sc0006210-1575043694:1301..1457Clytia hemisphaericaexon
TCONS_00044786-exon-sc0006210-1510915933:2031..2200TCONS_00044786-exon-sc0006210-1510915933:2031..2200Clytia hemisphaericaexon
TCONS_00044786-exon-sc0006210-1510915933:1301..1457TCONS_00044786-exon-sc0006210-1510915933:1301..1457Clytia hemisphaericaexon
TCONS_00044786-exon-sc0006210-1491911889:2031..2200TCONS_00044786-exon-sc0006210-1491911889:2031..2200Clytia hemisphaericaexon
TCONS_00044786-exon-sc0006210-1491911889:1301..1457TCONS_00044786-exon-sc0006210-1491911889:1301..1457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006210supercontigsc0006210:1301..2200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	23.794	15.1584	47.6297	80.4944	8.35063	4.39523	206.256	232.893	11.9179	9.35772	39.642	37.2939	24.5319	24.4869	0	0	62.0667	81.5951
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR003410HYR_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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