TCONS_00044778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044778
Unique NameTCONS_00044778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044778 ID=TCONS_00044778|Name=TCONS_00044778|organism=Clytia hemisphaerica|type=transcript|length=273bp
ctTTTCTGAGAACTTGCAGAAGGAACTAATGTCATATCTAATTCCATTGC
TGAGAAATAGCTTCTCAAAGATTGCAGGTAGGGTAAGCCACTCGGCATGT
CAGCCACAGAATTTACTCACACTTTAGACAGCTATAGATCAATTTTGAGT
CAGtcacaaaatttcattctttttgcAACGGAAAGCTGAACTATTCAGCT
TAACAACAGATGCTTTTCCAAATGTAAGCCACAAAATGGTTTCACTCTAT
GAGCAAAGTTGTGGCTGACtgta
Run BLAST on NCBI

transcript from alignment at sc0006196:1586..1858

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044778 ID=TCONS_00044778|Name=TCONS_00044778|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at sc0006196:1586..1858 (Clytia hemisphaerica)
tacaGTCAGCCACAACTTTGCTCATAGAGTGAAACCATTTTGTGGCTTAC
ATTTGGAAAAGCATCTGTTGTTAAGCTGAATAGTTCAGCTTTCCGTTgca
aaaagaatgaaattttgtgaCTGACTCAAAATTGATCTATAGCTGTCTAA
AGTGTGAGTAAATTCTGTGGCTGACATGCCGAGTGGCTTACCCTACCTGC
AATCTTTGAGAAGCTATTTCTCAGCAATGGAATTAGATATGACATTAGTT
CCTTCTGCAAGTTCTCAGAAAag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028389XLOC_028389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044778-exon-sc0006196-1491911889:1586..1858TCONS_00044778-exon-sc0006196-1491911889:1586..1858Clytia hemisphaericaexon
TCONS_00044778-exon-sc0006196-1510915933:1586..1858TCONS_00044778-exon-sc0006196-1510915933:1586..1858Clytia hemisphaericaexon
TCONS_00044778-exon-sc0006196-1575043694:1586..1858TCONS_00044778-exon-sc0006196-1575043694:1586..1858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006196supercontigsc0006196:1586..1858 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.80336	3.70888	6.76714	9.62995	0.732721	2.31602	1.39709	1.30794	0.640129	1.30615	1.65142	2.89488	1.80678	3.00218	3.16674	2.64876	1.22364	1.67226	3.82552	3.02198	1.57599	3.07485	1.24596	0.566379	2.33343	0	1.49005	0.795109	0	1.84328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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