TCONS_00044766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044766
Unique NameTCONS_00044766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044766 ID=TCONS_00044766|Name=TCONS_00044766|organism=Clytia hemisphaerica|type=transcript|length=292bp
CTTGGAAATGAAAGAGTTACGTTAGgTGATAAAAATTATAGGATTGAAGA
AGGTACTGAACAACGAAGAACAATCGCCCGTATTGTATACCACCCGAAGT
TTAACATCAACACAGCAGACTTTGATTACGCAATGCTAGAGCTTGACAGT
CCCGTAGAAATTAATGATTACGTAAGACCGATCTGTTTACCACCTAGTTT
GATGCCGGAAAGTCGTTTCGCCGGAAAACAATGTAAAATCATTGGATGGG
GAATCTCTGAGATCATTGATGATACGAGTGCCATATTTCCAC
Run BLAST on NCBI

transcript from alignment at sc0006178:12..1014+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044766 ID=TCONS_00044766|Name=TCONS_00044766|organism=Clytia hemisphaerica|type=transcript|length=1003bp|location=Sequence derived from alignment at sc0006178:12..1014+ (Clytia hemisphaerica)
CTTGGAAATGAAAGAGTTACGTTAGGTAAGGTTACAAGAATGAAAGAGTT
ACTTTAGGTAAGGTTACAAGAATGAAAGAGTTACTTTAGATAAGGTTACA
AGAATGAAAGAGTTACTTAAGGTAATGTTACAAGAATGAAAGAGTTACTT
TAGGTAAGGTTACAAGAATGAAAGAGTTACTTTAGGTAATGTTACAAGAA
TGAAAGAGTTACTTTAGATAAGGTTACAAGAATGAAAGAGTTACTTTAGG
TAAGGTTACAAGAATGAAAGAGTTACTTTAGNTTACAAGAATGAAAGAGT
TACTTTAGGTAAGGTTACAAGAATGAAAGAGTTACTTTAGGTAATGTTAA
CTTACTTTTATACCACTAAAGTTATGAAGATTTAGGGTTCAGTGAGTGCA
GTTTTGACTAGTTGTCATCTTAAAATTagaattattttcatattttttta
gtAAGCTGAGTTTTTGGGTTATCTCATTCGTACGaagtttcgaattagag
agtacATCAACTGTAGATTTCACTTACAGCTAACTCTCTCTACTTCGATC
TTCATGGGACCAACGATTTTTCTTAGActaagagaaagattcgaatttca
GAGGGgaacaatattttagttcgaattttAGAAAAGTTCAAATGataaag
gttcgaattagagagagttcaTTGTATTAAAAGTTAAAAGAATGTTATGC
TTTTATGTAATCAGAGtcaatttgttttttctttaggTGATAAAAATTAT
AGGATTGAAGAAGGTACTGAACAACGAAGAACAATCGCCCGTATTGTATA
CCACCCGAAGTTTAACATCAACACAGCAGACTTTGATTACGCAATGCTAG
AGCTTGACAGTCCCGTAGAAATTAATGATTACGTAAGACCGATCTGTTTA
CCACCTAGTTTGATGCCGGAAAGTCGTTTCGCCGGAAAACAATGTAAAAT
CATTGGATGGGGAATCTCTGAGATCATTGATGATACGAGTGCCATATTTC
CAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028378XLOC_028378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044766-exon-sc0006178-1491911889:12..36TCONS_00044766-exon-sc0006178-1491911889:12..36Clytia hemisphaericaexon
TCONS_00044766-exon-sc0006178-1510915933:12..36TCONS_00044766-exon-sc0006178-1510915933:12..36Clytia hemisphaericaexon
TCONS_00044766-exon-sc0006178-1575043694:12..36TCONS_00044766-exon-sc0006178-1575043694:12..36Clytia hemisphaericaexon
TCONS_00044766-exon-sc0006178-1491911889:748..1014TCONS_00044766-exon-sc0006178-1491911889:748..1014Clytia hemisphaericaexon
TCONS_00044766-exon-sc0006178-1510915933:748..1014TCONS_00044766-exon-sc0006178-1510915933:748..1014Clytia hemisphaericaexon
TCONS_00044766-exon-sc0006178-1575043694:748..1014TCONS_00044766-exon-sc0006178-1575043694:748..1014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006178supercontigsc0006178:12..1014 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.588513	0	0	0	0.655622	0	0	2.05959	1.80827	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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