TCONS_00044742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044742
Unique NameTCONS_00044742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044742 ID=TCONS_00044742|Name=TCONS_00044742|organism=Clytia hemisphaerica|type=transcript|length=584bp
atttggtttgatttcaatacaaatactttttcaatttcagaGTGTTCAAG
ATCTTTCCTGATGTCATAGTTTAAATTCGATTTTATATAAACTCCAATTC
CTCCTCCGGTACCTTTATCTCGTGTTTTATAAATGAAGTCATACCCCTGA
ATATCGAAAGTTTTTGTATCAGATTTGTATCAGATTTGTATGATTCGTTT
TGTGTGTTGTCATTTTCGTCCTCGTCTGTGTTTACAAAAATTTCGTTCAG
TGCAAATATATCAATTTTTGTTGTGAGTAAGAGATTTTTAAGTTCGTCAA
AACTCCCTTGTAATCCACGAATGTTAAGGTTaaagattttcaaccctttg
gTGTTGCAAAACCTCATAGTATCTTCGATCAAACCATTATAAGGTCCAGG
ACAACGTTCGATATCTCCACATAATAACAATAAAGCAAAACAAACTTTTC
CTTCTTGGGTGTAAATAACGATGAATTTTGAAAGTGTACAACGACGAGTA
AATAAATGTCTCTCTTTCAAATACAACTGGTACATTCAAAGTTAAACTGA
TCCCATCTGATGTACAAAAACTTGGATTCTtcac
Run BLAST on NCBI

protein sequence of TCONS_00044742-protein

>TCONS_00044742-protein ID=TCONS_00044742-protein|Name=TCONS_00044742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MYQLYLKERHLFTRRCTLSKFIVIYTQEGKVCFALLLLCGDIERCPGPYN
GLIEDTMRFCNTKGLKIFNLNIRGLQGSFDELKNLLLTTKIDIFALNEIF
VNTDEDENDNTQNESYKSDTNLIQKLSIFRGMTSFIKHEIKVPEEELEFI
Run BLAST on NCBI

transcript from alignment at sc0006122:800..1383

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044742 ID=TCONS_00044742|Name=TCONS_00044742|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at sc0006122:800..1383 (Clytia hemisphaerica)
gtgaAGAATCCAAGTTTTTGTACATCAGATGGGATCAGTTTAACTTTGAA
TGTACCAGTTGTATTTGAAAGAGAGACATTTATTTACTCGTCGTTGTACA
CTTTCAAAATTCATCGTTATTTACACCCAAGAAGGAAAAGTTTGTTTTGC
TTTATTGTTATTATGTGGAGATATCGAACGTTGTCCTGGACCTTATAATG
GTTTGATCGAAGATACTATGAGGTTTTGCAACAccaaagggttgaaaatc
tttAACCTTAACATTCGTGGATTACAAGGGAGTTTTGACGAACTTAAAAA
TCTCTTACTCACAACAAAAATTGATATATTTGCACTGAACGAAATTTTTG
TAAACACAGACGAGGACGAAAATGACAACACACAAAACGAATCATACAAA
TCTGATACAAATCTGATACAAAAACTTTCGATATTCAGGGGTATGACTTC
ATTTATAAAACACGAGATAAAGGTACCGGAGGAGGAATTGGAGTTTATAT
AAAATCGAATTTAAACTATGACATCAGGAAAGATCTTGAACACtctgaaa
ttgaaaaagtatttgtattgaaatcaaaccaaat

Coding sequence (CDS) from alignment at sc0006122:800..1383

>TCONS_00044742 ID=TCONS_00044742|Name=TCONS_00044742|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0006122:800..1383 (Clytia hemisphaerica)
ATGTACCAGTTGTATTTGAAAGAGAGACATTTATTTACTCGTCGTTGTAC
ACTTTCAAAATTCATCGTTATTTACACCCAAGAAGGAAAAGTTTGTTTTG
CTTTATTGTTATTATGTGGAGATATCGAACGTTGTCCTGGACCTTATAAT
GGTTTGATCGAAGATACTATGAGGTTTTGCAACAccaaagggttgaaaat
ctttAACCTTAACATTCGTGGATTACAAGGGAGTTTTGACGAACTTAAAA
ATCTCTTACTCACAACAAAAATTGATATATTTGCACTGAACGAAATTTTT
GTAAACACAGACGAGGACGAAAATGACAACACACAAAACGAATCATACAA
ATCTGATACAAATCTGATACAAAAACTTTCGATATTCAGGGGTATGACTT
CATTTATAAAACACGAGATAAAGGTACCGGAGGAGGAATTGGAGTTTATA
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028355XLOC_028355Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044742-proteinTCONS_00044742-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044742-exon-sc0006122-1491911889:800..1383TCONS_00044742-exon-sc0006122-1491911889:800..1383Clytia hemisphaericaexon
TCONS_00044742-exon-sc0006122-1510915933:800..1383TCONS_00044742-exon-sc0006122-1510915933:800..1383Clytia hemisphaericaexon
TCONS_00044742-exon-sc0006122-1575043694:800..1383TCONS_00044742-exon-sc0006122-1575043694:800..1383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006122supercontigsc0006122:800..1383 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.189215	0.092257	0.642715	0.628797	0.127583	0.100818	0.364898	0.455484	0.318895	0.493754	0.575099	0.567072	0.566283	0.0653434	0.322327	0.288255	0	0.291178	0.502848	0.420956	0.640302	0.803101	0.108475	0.0986194	0.507878	0.362615	4.41066	2.90738	4.7253	2.99559
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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