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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044725 ID=TCONS_00044725|Name=TCONS_00044725|organism=Clytia hemisphaerica|type=transcript|length=243bp
CTTCGATCCTTCTCTTAACTGCTGTTACCAGAGACAGACGCAAAAAGGAG
AAAATCATTGGATCGTATTATGGCAGCTGTTACTCCAAGGAAACGTCCAC
agaaaagaaagtttgaaacaTCAGAACTTCACGACCTATGTGGCTATGTA
TCTTTTGTATCGGgtatcaaaataccaaaaaatcctGAAAAGTCTAAAGC
ACCCTACTTCGAGATGTATGTTGCACTTGAGAACAAGGAAGAA Run BLAST on NCBI transcript from alignment at sc0006088:2885..4324+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044725 ID=TCONS_00044725|Name=TCONS_00044725|organism=Clytia hemisphaerica|type=transcript|length=1440bp|location=Sequence derived from alignment at sc0006088:2885..4324+ (Clytia hemisphaerica)
CTTCGATCCTTCTCTTAACTGCTGTTACCAGAGACAGACGCAAAAAGTAT
GTACCTTTGAAATTTAAATCTGGTTTAATCTGATGAATCCAAATGCGATC
GATTATATTAAACATTGTGCTGTCATATATTCGGCCAATACATTATAATC
TATATTAAATACCAAGTGTTTCACTTCAAAATCTTTACTTTTCAGGGAGA
AAATCATTGGATCGTATTATGGCAGCTGTTACTCCAAGGAAACGTCCACa
gaaaagaaagtttgaaacaTCAGGTATTAATTCACAATTCAACTAATTAA
TTCAAATGCCTTTCAAAACTTGCCTAGAAAAGCTGAATCAACATTTGAAA
CACATTCTTGCAGATTCTAGCAGATTCTTGCATTACTTCCTGCTGATGAG
AATCTTGCTAGATGTTAGTCAGCAAGTCCCCGTGGGTATCAGGTTactga
tttttgaaataaacttttTCGACAATTTTGTGGTATCCATAGCAACGTAA
TTTCTAAATGACATGTCATCATTTTATAATGAATTAAAATTGCAAATGAC
CAATTAACTAAATTTAAGATAATAAACAAGAGCAGCCATTTgctaggaag
tatgaaatatctgttttGGGGTCcttttctcctggaaaaatatcAACTGT
TCTAggaaaaaatgggactcctggaaaatgtatacctgttcaatcaataa
aaataatacGATGCTGCTGGAAAAGTATAACAgcttttctctaagaaagt
tatGTTGCTCCTGGAAATATTAGTGTTTTTGCAACTTAGCTCCTCAAATT
TTTGAACAGATTGTCTGCTGGAAAATTGTACgtgtttttcattaaaatgt
gctcctggatttttaGAACAGAAGTATTAGGCTTAGACGCCCCCCGGATC
ATTGCATACCTTTAGAAATGGATGGCAAAAGCATATAAATAATAAAGTTT
AGAACACTTTGACATAGGCACCAccaatttttttatcttgaCATGATTTT
TCATATTGTTTGAAGCAAATAGTACGCTGTATATGAAATTGATATAGTCA
AAAGttcattcaaacaaaaacatctcaaaaaagcaagaaaaccaacttat
ttaaaggattttttcCAGGAGCAATTTGATCAATGAGCAGAGatgtttat
tttcattaaaattttctttgtttgctttaGAACTTCACGACCTATGTGGC
TATGTAAACAAACTGCATCAAGGAATCAACATAACTGGATTATCATAATC
ATCAGATGGTCAAGGTTTTTCCTTCATTAGTCAAACCAAGTTTATTGATA
AAAGGNATTTGTTTGCTTTAGAACTTCACGACCTATGTGGCTATGTATCT
TTTGTATCGGgtatcaaaataccaaaaaatcctGAAAAGTCTAAAGCACC
CTACTTCGAGATGTATGTTGCACTTGAGAACAAGGAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044725-exon-sc0006088-1491911889:2885..2930 | TCONS_00044725-exon-sc0006088-1491911889:2885..2930 | Clytia hemisphaerica | exon |
| TCONS_00044725-exon-sc0006088-1510915933:2885..2930 | TCONS_00044725-exon-sc0006088-1510915933:2885..2930 | Clytia hemisphaerica | exon |
| TCONS_00044725-exon-sc0006088-1575043694:2885..2930 | TCONS_00044725-exon-sc0006088-1575043694:2885..2930 | Clytia hemisphaerica | exon |
| TCONS_00044725-exon-sc0006088-1491911889:3080..3157 | TCONS_00044725-exon-sc0006088-1491911889:3080..3157 | Clytia hemisphaerica | exon |
| TCONS_00044725-exon-sc0006088-1510915933:3080..3157 | TCONS_00044725-exon-sc0006088-1510915933:3080..3157 | Clytia hemisphaerica | exon |
| TCONS_00044725-exon-sc0006088-1575043694:3080..3157 | TCONS_00044725-exon-sc0006088-1575043694:3080..3157 | Clytia hemisphaerica | exon |
| TCONS_00044725-exon-sc0006088-1491911889:4206..4324 | TCONS_00044725-exon-sc0006088-1491911889:4206..4324 | Clytia hemisphaerica | exon |
| TCONS_00044725-exon-sc0006088-1510915933:4206..4324 | TCONS_00044725-exon-sc0006088-1510915933:4206..4324 | Clytia hemisphaerica | exon |
| TCONS_00044725-exon-sc0006088-1575043694:4206..4324 | TCONS_00044725-exon-sc0006088-1575043694:4206..4324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006088 | supercontig | sc0006088:2885..4324 + |
Blast
The following BLAST results are available for this feature:
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