|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044715 ID=TCONS_00044715|Name=TCONS_00044715|organism=Clytia hemisphaerica|type=transcript|length=606bp
ACTTTACGTCACTCTttataaccaatcagctgttgggtccgtgatgtaat
gtcagaattCTTTTAGATCGTGTCTTATCCAAGCTTCCAAGTAAAGATCA
CGAAACCGTCGGGGAAGACATTGCATTTCAACGCATTATACAACAAATTG
TCAGAAGAGGAAGGACAAAATGATCCCGAGGAGCAGTTCGACCTCATCCG
ATTTGACAGTTTGAAAATTTATGATCAATCAATGAAAATGGAAGATGCAT
ACGAAGCCGAGACTGAAAATATGGACGGCGAACTGTACAGTATGTTAATG
ACGACATTACTGGAGCGTGGAATTACCGGAGCTTTCGTGAACGACCTCCT
GGATTTCAGTACGGCCTCAGAACACAAACAGTACGTCAAATTTCTTAAGG
AATTACAGGTATTcgcaaaagaaaaatgaaaatattacatggaaactttt
ctattttttatatatttcttatTCGCTTTGTAGATATAGAAGTTTATAGT
AGTGCATCATATTTTTTCTTGGCAAATAAATagttaaatttacaatttac
aatattttagtGCACTTATATAATATTTGTGTCTTAACCTCAATTTCGAA
AATAAC Run BLAST on NCBI transcript from alignment at sc0006062:17..1906+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044715 ID=TCONS_00044715|Name=TCONS_00044715|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at sc0006062:17..1906+ (Clytia hemisphaerica)
ACTTTACGTCACTCTttataaccaatcagctgttgggtccgtgatgtaat
gtcagaattCTTTTAGATCGTGTCTTATCCAAGCTTCCAAGTAAAGATCA
CGAAACCGTCGGGGAAGACATTGCATTTCAACGCATTATACAACAAATTG
TCAGAAGAGGAAGGACAAAATGATCCCGAGGAGCAGTTCGACCTCATCCG
ATTTGACAGTTTGAAAATTTATGATCAATCAATGAAAATGGAAGATGCAT
ACGAAGCCGAGACTGAAAATATGGACGGCGTAAGTAGAGTCTTATTTAGT
CAGGGGGGTccaacatccagataccagacccatagccgggtggtggtgtc
tttttttactttgaaagtctgaaaagtcaagttggtattgatgggggtgg
gtccccctttttttagaaaaaaagagttatcctcagttggtattgatacc
aaaatagggggaTGGGTACCCCTTTTATTAAAgaatatgattcagaaagt
tggtatccatatcaaaaagacagcaaaactttcctattttttgcccttta
tagctagaaaataataccccggggtacatatcagtctaaacaggtttcaa
ttggatttgttttagcttttgagtataatgactttgaagtttgtttattt
tggactttttcgatattttcaagttttatttttgatcaagcctgaagctT
TTTCTGTGATggcatttggtaatgagtgaatctattctgttctaaaatta
tgtactaataataaCTTCTCCTAGTTTTcgcacatcaattatattcagat
aatattgattcagattgattttgcttGAAGATATTTGTTATGTATTGTCT
TGCAAAAGCAACGGATAATATTTACTTGATCCGTAAAAAATGTCGGCCGt
tcttttcaattctttttcgacATTTTTAACGTCGAAGCGTTCTCTATTGT
TCTGCTTGGATGATTTGTTAAGATTCGTTTACTAGAATGTTACGTTGAGA
TTCCCTCCAGATCGATACAATCCACACTTTTATGTTATCAATATCAATAT
GTCTTATACATACTCAACTTCCCAACCATTTATTGTGGTTTACTACCAAA
ATTGGGACTCCAGTGCAGTATTCTCTGAATTGGGTTAAACTTATTCCCAC
AGTTAGACAAGTGAGAGTTAGACTTGCGTAACCTTTCTGCATCTTTACCA
AATATTACCAAGACTACATACAGTACTATGAAAAGAAGTGAGATTTGATG
AAATTGCTAACGCATTAGGCTCTTCCAAAAcatgttcgtacatgggggtg
ggagtgaggatatattgtccggtgGGTAGTGAATAAATTGTCCGGGGGAG
TAAATGCGCTCTGTATCGGagtgattttgaatgtccggggtTCGACTGAT
GCTAGTCCGGGCGGTTAGACTCAGTTGTCCAGGCAGGGGGGTAAATGTTA
CAACGCTAGGgggtaaattttctaaaatgttatACCCTCCACCtctaata
ttcttttttttctggaagagcccattaggATCtctaaaagtttgtttttt
tcatcgTCTTCAGGAACTGTACAGTATGTTAATGACGACATTACTGGAGC
GTGGAATTACCGGAGCTTTCGTGAACGACCTCCTGGATTTCAGTACGGCC
TCAGAACACAAACAGTACGTCAAATTTCTTAAGGAATTACAGGTATTcgc
aaaagaaaaatgaaaatattacatggaaacttttctattttttatatatt
tcttatTCGCTTTGTAGATATAGAAGTTTATAGTAGTGCATCATATTTTT
TCTTGGCAAATAAATagttaaatttacaatttacaatattttagtGCACT
TATATAATATTTGTGTCTTAACCTCAATTTCGAAAATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044715-exon-sc0006062-1491911889:17..295 | TCONS_00044715-exon-sc0006062-1491911889:17..295 | Clytia hemisphaerica | exon |
| TCONS_00044715-exon-sc0006062-1510915933:17..295 | TCONS_00044715-exon-sc0006062-1510915933:17..295 | Clytia hemisphaerica | exon |
| TCONS_00044715-exon-sc0006062-1575043694:17..295 | TCONS_00044715-exon-sc0006062-1575043694:17..295 | Clytia hemisphaerica | exon |
| TCONS_00044715-exon-sc0006062-1491911889:1580..1906 | TCONS_00044715-exon-sc0006062-1491911889:1580..1906 | Clytia hemisphaerica | exon |
| TCONS_00044715-exon-sc0006062-1510915933:1580..1906 | TCONS_00044715-exon-sc0006062-1510915933:1580..1906 | Clytia hemisphaerica | exon |
| TCONS_00044715-exon-sc0006062-1575043694:1580..1906 | TCONS_00044715-exon-sc0006062-1575043694:1580..1906 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006062 | supercontig | sc0006062:17..1906 + |
Blast
The following BLAST results are available for this feature:
|
