TCONS_00044708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044708
Unique NameTCONS_00044708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044708 ID=TCONS_00044708|Name=TCONS_00044708|organism=Clytia hemisphaerica|type=transcript|length=351bp
AAAACACATCCTCACGGAAAGGAAATATGACATCTTGTCAATTTATTAAT
TCAGTCAAACAAATACACACTGAATCTTTTGAATACAATGtcacaaaaat
caaacaatACAATAGGGTAAGGGATGAATATGGTTCTAAAGTACAAGGCG
CACTCAGGACGAGAAACCAGAAGGGGAAAGAGGTTCCCGCTACTCATTGG
AAGGGTGATCAAGTCCTCCAAAAAAAAACACGGGTTGGGGAAATCCAGAA
ATTTTTCACAGAAGaacaaaatagcaaaaaaaaatttccaagacGAACCA
AGAATTCAAGAACAACTACCATAATGTCGGTTGGGGATGAGAGAataggg
g
Run BLAST on NCBI

protein sequence of TCONS_00044708-protein

>TCONS_00044708-protein ID=TCONS_00044708-protein|Name=TCONS_00044708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
NTSSRKGNMTSCQFINSVKQIHTESFEYNVTKIKQYNRVRDEYGSKVQGA
LRTRNQKGKEVPATHWKGDQVLQKKTRVGEIQKFFTEEQNSKKKFPRRTK
NSRTTTIMSVGDERIG
Run BLAST on NCBI

transcript from alignment at sc0006047:2195..2545

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044708 ID=TCONS_00044708|Name=TCONS_00044708|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at sc0006047:2195..2545 (Clytia hemisphaerica)
cccctatTCTCTCATCCCCAACCGACATTATGGTAGTTGTTCTTGAATTC
TTGGTTCgtcttggaaatttttttttgctattttgttCTTCTGTGAAAAA
TTTCTGGATTTCCCCAACCCGTGTTTTTTTTTGGAGGACTTGATCACCCT
TCCAATGAGTAGCGGGAACCTCTTTCCCCTTCTGGTTTCTCGTCCTGAGT
GCGCCTTGTACTTTAGAACCATATTCATCCCTTACCCTATTGTattgttt
gatttttgtgaCATTGTATTCAAAAGATTCAGTGTGTATTTGTTTGACTG
AATTAATAAATTGACAAGATGTCATATTTCCTTTCCGTGAGGATGTGTTT
T

Coding sequence (CDS) from alignment at sc0006047:2195..2545

>TCONS_00044708 ID=TCONS_00044708|Name=TCONS_00044708|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0006047:2195..2545 (Clytia hemisphaerica)
ccctatTCTCTCATCCCCAACCGACATTATGGTAGTTGTTCTTGAATTCT
TGGTTCgtcttggaaatttttttttgctattttgttCTTCTGTGAAAAAT
TTCTGGATTTCCCCAACCCGTGTTTTTTTTTGGAGGACTTGATCACCCTT
CCAATGAGTAGCGGGAACCTCTTTCCCCTTCTGGTTTCTCGTCCTGAGTG
CGCCTTGTACTTTAGAACCATATTCATCCCTTACCCTATTGTattgtttg
atttttgtgaCATTGTATTCAAAAGATTCAGTGTGTATTTGTTTGACTGA
ATTAATAAATTGACAAGATGTCATATTTCCTTTCCGTGAGGATGTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028323XLOC_028323Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044708-proteinTCONS_00044708-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044708-exon-sc0006047-1491911889:2195..2545TCONS_00044708-exon-sc0006047-1491911889:2195..2545Clytia hemisphaericaexon
TCONS_00044708-exon-sc0006047-1510915933:2195..2545TCONS_00044708-exon-sc0006047-1510915933:2195..2545Clytia hemisphaericaexon
TCONS_00044708-exon-sc0006047-1575043694:2195..2545TCONS_00044708-exon-sc0006047-1575043694:2195..2545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006047supercontigsc0006047:2195..2545 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42553	0.974545	0.282885	1.29001	1.34771	2.12996	2.89091	1.91395	0.842151	2.21477	2.78437	0.332788	0.805875	2.07074	0.141869	1.35674	0.562668	1.46879	1.85912	1.11168	1.89636	2.22034	0.286465	0.520877	3.75543	1.51758	0.685169	0	2.00976	1.13012
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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