TCONS_00044686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044686
Unique NameTCONS_00044686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044686 ID=TCONS_00044686|Name=TCONS_00044686|organism=Clytia hemisphaerica|type=transcript|length=784bp
AGAATATCCAATCCTGACCAATCCATCTAGAGTTTTAATTTACTAAATTG
GCAAGGAAACAATCGTATTTCTTTgaaatctttgattttcaaCACTGATC
TAGTGTTTGATAAATTATTTGAGTCACTAAGGTTGTCATTTCACTAAATT
GTTCTTTTTGATTTAAGTGCTGCTAACAAATGCTTACTAAAAGTTGCAAT
GCATTCCGCTACGCAAGAAAATTACAACAAAGCCATCAGCTTGTATGAAG
AAGTAGCAGCTGTTGCTCTTGAAAGCTCTCTATTGAAATACAGTGCTCGA
GAATACCTTTTTAAAGCATCTCTTTGTCAACTTTGCCATGACATGGATGT
GGCGAAAGGTTCAATCGAAAAATATTGCCAGATGTTTCCTGCTTTTGAGG
ACTCCAGAGAAATGAAATTATTAACAGTATgtaatttacacgtttttttt
ttataaggaaccttaactttgctctgagcctggagttccttatttttaca
gagaatttcagtctcaaagttccttNctctgagcctggagttccttattt
ttacagaaaatttcagtctcaaagttccttatcgagttccttactacata
ggaaattttgaacttttagccccttgaaagatcaaaatttggtcaaatta
gtcccaataaggtacattattttcaaatccacttattatCAGCCTGATCA
GTTCCTtaaaaattccttattttttgaaccattttcagcctcgagttcct
tataaacgtgttccttataaaaaaaaaacgtgta
Run BLAST on NCBI

transcript from alignment at sc0006012:27..1030+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044686 ID=TCONS_00044686|Name=TCONS_00044686|organism=Clytia hemisphaerica|type=transcript|length=1004bp|location=Sequence derived from alignment at sc0006012:27..1030+ (Clytia hemisphaerica)
AGAATATCCAATCCTGACCAATCCATCTAGAGTTTTAATTTACTAAATTG
GCAAGGAAACAATCGTATTTCTTTgaaatctttgattttcaaCACTGATC
TAGTGTTTGATAAATTATTTGAGTCACTAAGGTTGTCATTTCACTAAATT
GTTCTTTTTGATTTAAGTGCTGCTAACAAATGCTTACTAAAAGTTGCAAT
GCATTCCGCTACGCAAGAAAATTACAACAAAGCCATCAGCTTGTATGAAG
AAGTAagaattctttttcattttagccTCATCTGTAAAGTTTTAAGAGAT
TGATAATTGATTAGTTTGACAATATTCTCTGGGATCTTAATTCAATTCAT
TTGCCAAACATTTTACCGAAGTCAACTTATTCGAGCTACAATTTCTTTAA
GCTTTGCAACAAAATTGTTAGTTTGATTGGAAGCACCCAGTTTctgattc
aaaattttcgattATTTTTTAGGTAGCAGCTGTTGCTCTTGAAAGCTCTC
TATTGAAATACAGTGCTCGAGAATACCTTTTTAAAGCATCTCTTTGTCAA
CTTTGCCATGACATGGATGTGGCGAAAGGTTCAATCGAAAAATATTGCCA
GATGTTTCCTGCTTTTGAGGACTCCAGAGAAATGAAATTATTAACAGTAT
gtaatttacacgttttttttttataaggaaccttaactttgctctgagcc
tggagttccttatttttacagagaatttcagtctcaaagttccttNctct
gagcctggagttccttatttttacagaaaatttcagtctcaaagttcctt
atcgagttccttactacataggaaattttgaacttttagccccttgaaag
atcaaaatttggtcaaattagtcccaataaggtacattattttcaaatcc
acttattatCAGCCTGATCAGTTCCTtaaaaattccttattttttgaacc
attttcagcctcgagttccttataaacgtgttccttataaaaaaaaaacg
tgta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028301XLOC_028301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044686-exon-sc0006012-1491911889:27..278TCONS_00044686-exon-sc0006012-1491911889:27..278Clytia hemisphaericaexon
TCONS_00044686-exon-sc0006012-1510915933:27..278TCONS_00044686-exon-sc0006012-1510915933:27..278Clytia hemisphaericaexon
TCONS_00044686-exon-sc0006012-1575043694:27..278TCONS_00044686-exon-sc0006012-1575043694:27..278Clytia hemisphaericaexon
TCONS_00044686-exon-sc0006012-1491911889:499..1030TCONS_00044686-exon-sc0006012-1491911889:499..1030Clytia hemisphaericaexon
TCONS_00044686-exon-sc0006012-1510915933:499..1030TCONS_00044686-exon-sc0006012-1510915933:499..1030Clytia hemisphaericaexon
TCONS_00044686-exon-sc0006012-1575043694:499..1030TCONS_00044686-exon-sc0006012-1575043694:499..1030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006012supercontigsc0006012:27..1030 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.1525	35.1416	31.891	28.3072	22.4243	18.991	27.4342	30.6426	41.453	38.4468	34.365	32.7177	30.9686	25.0773	29.7013	28.9132	36.2599	37.2416	19.3604	33.0185	33.9528	36.2218	33.3923	36.7907	21.1755	27.1953	40.12	32.8032	35.3919	32.2594
Blast
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BLAST of TCONS_00044686 vs. Swiss-Prot (Human)
Match: SNAA (Alpha-soluble NSF attachment protein OS=Homo sapiens GN=NAPA PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.701e-25
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:  166 SAANKCLLKVAMHSATQENYNKAISLYEEVAAVALESSLLKYSAREYLFKASLCQLCHDMDVAKGSIEKYCQMFPAFEDSREMKLL 423
            S+ANKCLLKVA ++A  E Y KAI +YE+V   A++S LLKYSA++Y FKA+LC  C DM  AK +++KY ++FPAF DSRE KL+
Sbjct:  159 SSANKCLLKVAGYAALLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKAALCHFCIDMLNAKLAVQKYEELFPAFSDSRECKLM 244
The following BLAST results are available for this feature:
BLAST of TCONS_00044686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNAA2.701e-2558.14Alpha-soluble NSF attachment protein OS=Homo sapie... [more]
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