TCONS_00044678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044678
Unique NameTCONS_00044678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044678 ID=TCONS_00044678|Name=TCONS_00044678|organism=Clytia hemisphaerica|type=transcript|length=259bp
aaaagaaacatgttttaagcttttaattatttgtattaaaaagaaagtat
tattCATTTCAAGATAATTAATAATACAACCCAATTTTCGTAAAGTGTAA
TAGTGACCGATTTTCAATACTGTCCTTTCTCATCACCATTTTGATTGTAA
CATCAcactaaatgaaaaattatagaAAAGTGGTCCAAGTTATTACCTAG
GTAAGTTTAATCATAAGAGATCCAAAAATATACGATGAACTATAACTACC
TTCAtaaac
Run BLAST on NCBI

transcript from alignment at sc0006000:39..297

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044678 ID=TCONS_00044678|Name=TCONS_00044678|organism=Clytia hemisphaerica|type=transcript|length=259bp|location=Sequence derived from alignment at sc0006000:39..297 (Clytia hemisphaerica)
gtttaTGAAGGTAGTTATAGTTCATCGTATATTTTTGGATCTCTTATGAT
TAAACTTACCTAGGTAATAACTTGGACCACTTTtctataatttttcattt
agtgTGATGTTACAATCAAAATGGTGATGAGAAAGGACAGTATTGAAAAT
CGGTCACTATTACACTTTACGAAAATTGGGTTGTATTATTAATTATCTTG
AAATGaataatactttctttttaatacaaataattaaaagcttaaaacat
gtttctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028293XLOC_028293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044678-exon-sc0006000-1491911889:39..297TCONS_00044678-exon-sc0006000-1491911889:39..297Clytia hemisphaericaexon
TCONS_00044678-exon-sc0006000-1510915933:39..297TCONS_00044678-exon-sc0006000-1510915933:39..297Clytia hemisphaericaexon
TCONS_00044678-exon-sc0006000-1575043694:39..297TCONS_00044678-exon-sc0006000-1575043694:39..297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006000supercontigsc0006000:39..297 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.66613	4.54982	1.50936	1.47668	1.79771	0	0	0	1.12335	0	1.35057	4.43907	0.886579	0.460361	1.8924	0.406166	2.00145	2.56428	2.83415	1.48287	3.86665	1.88602	1.52847	2.77919	0	0	21.0208	19.5078	4.43879	2.26121
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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