TCONS_00044672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044672
Unique NameTCONS_00044672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044672 ID=TCONS_00044672|Name=TCONS_00044672|organism=Clytia hemisphaerica|type=transcript|length=1209bp
ctctggttaaaatcaattttcaaaaaacaaatagGCCGAGACATAGTGGT
ACACTTTCAATAGAAAAGTATTGTTAAACATTTTCAtaaaTTTCAATTGA
CGATTAAAGGATTGAAAAAGTTGAGCATTTAATGATTTCATCTCTGCTGT
TTTTTCAAGTCTTAtgtacaaaaaaaatttacatattcAGATATCTTAAG
CACCcgcaaaaaaaacacaaaaatgtggtaaaaaaatttgaaatttcaat
gaaatcaAATACTTGATAAGATAGTCACCAGTGCTTCCATATGACTTTAA
TCATAGAAGTCACcattgtcaaaataaaaaaNAAATTTCAATGAAATCAA
ATACTTGATAAGATAGTCACCAGTGCTTCCATATGACTTTAATCATAGAA
GTCACcattgtcaaaataaaaaataaggtAACTATAAATCATACACAAAA
TGCAAATATAATAATGAAAAGCTAGGAGAGGAGAGGAAAAAGATAATAAT
TTCGGGACACATTTTGAATAATATATATCTatatattgaaaatattgttt
ctttcattttactTGGCGCTTGGATCAAGTTGATTGCCAACTAGTTTCGA
CGATAGCTTGTACTTTCTTTTCGTATTCACGTTTGTTCTCTTGATAAAGT
TGTGCAGCTAAACTGTTGGCAGGGCTGTTCGGATTTGGCTCGTCTAACAA
TGACTGTCAAGAAAGAGACGTGTTACTTTTAGATTATTTGGTTCACAACG
AACGGGAAAGGCTGTGatgtttttaaccaaaaaagtTTGTAATCTATACA
CGGATAGTTGGAGAAAGTAGTCAATTTAAATGTGTCGGTTTGAGCTGGCT
GTTAGGGTTATATGCAAAAGGATAATGCCTGAAATGTGAAGGAGCCCGAT
ATTTGTTGGATAAATTTTAGCCCAAAAAACAGCTAACAAAtggatttttt
tataatttgttaGAAATTGCATCATTATTTGTTTCCATAAAAGTAGGGGT
GCCACCGCAGTTTTATTCCATCATCGGACGTAGACCTGGTTTATTAGCGG
TCGAAGACCTTAATTAACGGCCGAAGACTTGAATTAACGTCCCCCTCTTT
GAAAGTGAATTTTATCAAGTTCTATGAACTGTTGTTAAAGAAGCAATCCT
ATTTTTCGGAAAGAgaaaggataaacttaaattttaagcGGTCATTTGTC
AAAAAAAGT
Run BLAST on NCBI

transcript from alignment at sc0005985:21..1611-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044672 ID=TCONS_00044672|Name=TCONS_00044672|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at sc0005985:21..1611- (Clytia hemisphaerica)
CTCTGGTTAAAATCAATTTTCAAAAAACAAATAGGCCGAGACATAGTGGT
ACACTTTCAATAGAAAAGTATTGTTAAACATTTTCATAAAGCTGGGAGCA
AACCATCAAACATGGTTCTTCAAACATGTGAACTTTCTTGTTGAATGGTT
TGCGCGGCATTTTCCAACATTGTCTCAAACATTTATTTTGTTGCATTACA
ACGGCTTCTTTCTTTTGTTTATTTTTCAAATCACGCGTTCGAAATCATAT
TCAATGTTCGATTAGCAATGCAATGTCTTCCTTCTAGGGAAACCCCGAGT
TGAATGTTTGAAAGAATTATGAACTTGTTCAAACATTGTTTCAAACATAT
TTTTTGATCTTTTTGTTGAAAAGATACGATTTTTGACTCCGCAAACCGTC
AAACATCGATTTCAAACATGAAACGTCACGATGTTTGAAGAAAAATGTTT
GACGGTTTGCTCCCAGCTTAAGTTTCAATTGACGATTAAAGGATTGAAAA
AGTTGAGCATTTAATGATTTCATCTCTGCTGTTTTTTCAAGTCTTATGTA
CAAAAAAAATTTACATATTCAGATATCTTAAGCACCCGCAAAAAAAACAC
AAAAATGTGGTAAAAAAATTTGAAATTTCAATGAAATCAAATACTTGATA
AGATAGTCACCAGTGCTTCCATATGACTTTAATCATAGAAGTCACCATTG
TCAAAATAAAAAANAAATTTCAATGAAATCAAATACTTGATAAGATAGTC
ACCAGTGCTTCCATATGACTTTAATCATAGAAGTCACCATTGTCAAAATA
AAAAATAAGGTAACTATAAATCATACACAAAATGCAAATATAATAATGAA
AAGCTAGGAGAGGAGAGGAAAAAGATAATAATTTCGGGACACATTTTGAA
TAATATATATCTATATATTGAAAATATTGTTTCTTTCATTTTACTTGGCG
CTTGGATCAAGTTGATTGCCAACTAGTTTCGACGATAGCTTGTACTTTCT
TTTCGTATTCACGTTTGTTCTCTTGATAAAGTTGTGCAGCTAAACTGTTG
GCAGGGCTGTTCGGATTTGGCTCGTCTAACAATGACTGTCAAGAAAGAGA
CGTGTTACTTTTAGATTATTTGGTTCACAACGAACGGGAAAGGCTGTGAT
GTTTTTAACCAAAAAAGTTTGTAATCTATACACGGATAGTTGGAGAAAGT
AGTCAATTTAAATGTGTCGGTTTGAGCTGGCTGTTAGGGTTATATGCAAA
AGGATAATGCCTGAAATGTGAAGGAGCCCGATATTTGTTGGATAAATTTT
AGCCCAAAAAACAGCTAACAAATGGATTTTTTTATAATTTGTTAGAAATT
GCATCATTATTTGTTTCCATAAAAGTAGGGGTGCCACCGCAGTTTTATTC
CATCATCGGACGTAGACCTGGTTTATTAGCGGTCGAAGACCTTAATTAAC
GGCCGAAGACTTGAATTAACGTCCCCCTCTTTGAAAGTGAATTTTATCAA
GTTCTATGAACTGTTGTTAAAGAAGCAATCCTATTTTTCGGAAAGAGAAA
GGATAAACTTAAATTTTAAGCGGTCATTTGTCAAAAAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028287XLOC_028287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044672-exon-sc0005985-1575043694:1522..1611TCONS_00044672-exon-sc0005985-1575043694:1522..1611Clytia hemisphaericaexon
TCONS_00044672-exon-sc0005985-1575043694:21..1139TCONS_00044672-exon-sc0005985-1575043694:21..1139Clytia hemisphaericaexon
TCONS_00044672-exon-sc0005985-1510915933:1522..1611TCONS_00044672-exon-sc0005985-1510915933:1522..1611Clytia hemisphaericaexon
TCONS_00044672-exon-sc0005985-1510915933:21..1139TCONS_00044672-exon-sc0005985-1510915933:21..1139Clytia hemisphaericaexon
TCONS_00044672-exon-sc0005985-1491911889:1522..1611TCONS_00044672-exon-sc0005985-1491911889:1522..1611Clytia hemisphaericaexon
TCONS_00044672-exon-sc0005985-1491911889:21..1139TCONS_00044672-exon-sc0005985-1491911889:21..1139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005985supercontigsc0005985:21..1611 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
57.5002	58.4352	32.3146	27.4693	48.6444	36.794	58.2285	58.5475	49.1622	33.6581	62.1287	51.9788	50.3155	57.372	35.4391	31.6316	35.1092	41.926	66.0628	58.214	82.8631	76.619	46.2966	48.8383	69.8286	76.9739	69.1485	76.461	45.2575	42.1957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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