TCONS_00044670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044670
Unique NameTCONS_00044670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044670 ID=TCONS_00044670|Name=TCONS_00044670|organism=Clytia hemisphaerica|type=transcript|length=346bp
TCCTTCTTTTTGGTGAATTTGGCTCTGGTTGTCATCACAATGCAATTCTC
AGAAACCAAACGTCGTGAAATGAGGCTTATAAAACAGAATCGCCATTTTG
GATCATCTCAACTTTCATTATATACTGATCTATGTTCCATCTGGAAACGT
GTCTGCAACGTTTGTAGTTGCTTCACAAATTACtttCGTAGTATTCATCA
TATCCATCAGCACGTGTTCGTTCATCAACAATCTTCATTGTGTGACCACT
GTCGACGTGAATATTCACCTGATGAACCGACCTTGGTCTCACTTCCTAAA
AATAATCTTCCACAAATGATCATACCTAATATTGAAGTATCTCAGT
Run BLAST on NCBI

protein sequence of TCONS_00044670-protein

>TCONS_00044670-protein ID=TCONS_00044670-protein|Name=TCONS_00044670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
SFFLVNLALVVITMQFSETKRREMRLIKQNRHFGSSQLSLYTDLCSIWKR
VCNVCSCFTNYFRSIHHIHQHVFVHQQSSLCDHCRREYSPDEPTLVSLPK
NNLPQMIIPNIEVSQ
Run BLAST on NCBI

transcript from alignment at sc0005976:1743..2698-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044670 ID=TCONS_00044670|Name=TCONS_00044670|organism=Clytia hemisphaerica|type=transcript|length=956bp|location=Sequence derived from alignment at sc0005976:1743..2698- (Clytia hemisphaerica)
TCCTTCTTTTTGGTGAATTTGGCTCTGGTTGTCATCACAATGCAATTCTC
AGAAACCAAACGTCGTGAAATGAGGCTTATAAAACAGAATCGCCATTTTG
GATCATCTCAACTTTCATTATATACTGATCTATGTTCCATCTGGAAACGT
GTCTGCAACGTTTGTAGTTGCTTCACAAATTACGTAAGTATGCCAATGTG
AAACACAACCTTGTTTCAACGTTCATCTAGCGTTATATTGAGGCTATGAA
TATAAGGTGGGACAACTGTCTCCCGGAACAATGCACCCTAAAAAAGTTGT
CCTCCTTTAATTTTGACCGACATTAAAATTCTGCTTTTTCAATACAAACG
CCGAATTAAAAAGAAACTTTTAAAACTCATGTGAGTTACGGAAAGTCCAA
AACCTATGTCAAAAGAAGCGTATTAATGAGATGGTGGCGAGAATTAAGTA
ACAATGGGAAGCGGTGGGGAATCGGTATAGGTTTTGGACTTTCCTTAACT
CACCTAAGAAATTTCTGATTCGATCAAACATCAAACGGGACATAATATCC
ATTGGAAGTAGTGTTATTGTCTTTGTCTCAGATGAAGCATTGATCATATT
TGATACCGTTGGTCTAATGTCAACATGGAAACTATTTTTCTTTCCTTGGT
GATCAGAGTGGAAAAAATTTTGTCTATTAGTGATCCCGACCTTCCTTATA
TTCCTATCTCTAAAGAAGGGTGTCGAAATTAGAAGAGGGATGTCGACATT
AGACCAACTTACGGTAAGTTTAATCTGTTTTTGATTTTTTTAGTTTCGTA
GTATTCATCATATCCATCAGCACGTGTTCGTTCATCAACAATCTTCATTG
TGTGACCACTGTCGACGTGAATATTCACCTGATGAACCGACCTTGGTCTC
ACTTCCTAAAAATAATCTTCCACAAATGATCATACCTAATATTGAAGTAT
CTCAGT

Coding sequence (CDS) from alignment at sc0005976:1743..2698-

>TCONS_00044670 ID=TCONS_00044670|Name=TCONS_00044670|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0005976:1743..2698- (Clytia hemisphaerica)
TTTCGTAGTATTCATCATATCCATCAGCACGTGTTCGTTCATCAACAATC
TTCATTGTGTGACCACTGTCGACGTGAATATTCACCTGATGAACCGACCT
TGGTCTCACTTCCTAAAAATAATCTTCCACAAATGATCATACCTAATATT
GAAGTATCTCAGTCCTTCTTTTTGGTGAATTTGGCTCTGGTTGTCATCAC
AATGCAATTCTCAGAAACCAAACGTCGTGAAATGAGGCTTATAAAACAGA
ATCGCCATTTTGGATCATCTCAACTTTCATTATATACTGATCTATGTTCC
ATCTGGAAACGTGTCTGCAACGTTTGTAGTTGCTTCACAAATTACTTTCG
TAGTATTCATCATATCCATCAGCACGTGTTCGTTCATCAACAATCTTCAT
TGTGTGACCACTGTCGACGTGAATATTCACCTGATGAACCGACCTTGGTC
TCACTTCCTAAAAATAATCTTCCACAAATGATCATACCTAATATTGAAGT
ATCTCAGTCCTTCTTTTTGGTGAATTTGGCTCTGGTTGTCATCACAATGC
AATTCTCAGAAACCAAACGTCGTGAAATGAGGCTTATAAAACAGAATCGC
CATTTTGGATCATCTCAACTTTCATTATATACTGATCTATGTTCCATCTG
GAAACGTGTCTGCAACGTTTGTAGTTGCTTCACAAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028286XLOC_028286Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044670-proteinTCONS_00044670-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044670-exon-sc0005976-1575043694:2516..2698TCONS_00044670-exon-sc0005976-1575043694:2516..2698Clytia hemisphaericaexon
TCONS_00044670-exon-sc0005976-1575043694:1743..1905TCONS_00044670-exon-sc0005976-1575043694:1743..1905Clytia hemisphaericaexon
TCONS_00044670-exon-sc0005976-1510915933:2516..2698TCONS_00044670-exon-sc0005976-1510915933:2516..2698Clytia hemisphaericaexon
TCONS_00044670-exon-sc0005976-1510915933:1743..1905TCONS_00044670-exon-sc0005976-1510915933:1743..1905Clytia hemisphaericaexon
TCONS_00044670-exon-sc0005976-1491911889:2516..2698TCONS_00044670-exon-sc0005976-1491911889:2516..2698Clytia hemisphaericaexon
TCONS_00044670-exon-sc0005976-1491911889:1743..1905TCONS_00044670-exon-sc0005976-1491911889:1743..1905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005976supercontigsc0005976:1743..2698 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.252528	0	0	0.349223	0	5.99283	7.79225	4.80087	5.40605	2.36126	2.41453	2.23895	0.536578	0.44114	1.57803	0.583203	0.797019	0	0.288062	2.50378	4.03015	0.890758	2.69943	1.94624	2.72953	5.68139	3.41062	0	1.46421
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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