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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044667 ID=TCONS_00044667|Name=TCONS_00044667|organism=Clytia hemisphaerica|type=transcript|length=422bp
CAGTTTCTCTTGATGCTACTTGGTATGAAGCAGGCAACCTCCAACAATGC
ATGCATATACTGCGACATTAACAAGAATGACCGCCAAGATCCTTCAAAGT
CAGGAAAAAAACGAACCATCAATGCAAAATGGAGCAAGCAGCCAGGATGC
AAGGATGACCCAATCTTCTCAGATGTCCCGATTGATCATTATTGCGTTGA
TGAGCTGCATCTTTTGCTGAGGGTCACAGACCGGTTGGAGGATGGAATGT
TCCATACCATTATTGATATCGATGAAAAAAATGGAAACAATGATATGCAA
TCAAAACTTGTGTCTGCAATGAAATCAATCGGcatcactttgaaattttg
gagagacaagaaaaataaattggaGTGGACATCATTAATGGGTAGTGATA
AGAagagaatgttgaaaaagtt Run BLAST on NCBI protein sequence of TCONS_00044667-protein >TCONS_00044667-protein ID=TCONS_00044667-protein|Name=TCONS_00044667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
QFLLMLLGMKQATSNNACIYCDINKNDRQDPSKSGKKRTINAKWSKQPGC
KDDPIFSDVPIDHYCVDELHLLLRVTDRLEDGMFHTIIDIDEKNGNNDMQ
SKLVSAMKSIGITLKFWRDKKNKLEWTSLMGSDKKRMLKK Run BLAST on NCBI transcript from alignment at sc0005970:138..891+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044667 ID=TCONS_00044667|Name=TCONS_00044667|organism=Clytia hemisphaerica|type=transcript|length=754bp|location=Sequence derived from alignment at sc0005970:138..891+ (Clytia hemisphaerica)
CAGTTTCTCTTGATGCTACTTGGTATGAAGCAGGCAACCTCCAACAATGC
ATGCATATACTGCGACATTAACAAGAATGACCGGTAAGTGTGCAACCTAA
AATGTAAGATTATTTTCTTAACTGTAATCTTGATTTCAACAAATGCAAAA
TAATGTAGTTAAACTCTGAGAGAGCCACAAGTACTAAAAAGATTACACAA
TATCACCAAGGATAATTTATATAAAACTCTtagctttaaaaaatctcaac
ACTATACAAAtcttaaatcaatttttagCCAAGATCCTTCAAAGTCAGGA
AAAAAACGAACCATCAATGCAAAATGGAGCAAGCAGCCAGGATGCAAGGA
TGACCCAATCTTCTCAGATGTCCCGATTGATCATTATTGCGTTGATGAGC
TGCATCTTTTGCTGAGGGTCACAGACCGGTTGGAGGATGGAATGTTCCAT
ACCATTATTGATATCGATGAAGTAAGTGGACTTCCTGAAATTCGAGTTAT
AAAATGTGTCAAATTATTACTACTGATTGAAATTCACATCATAGATAGGG
ATTTAGGCTAGGTATATTTATCACAAATCAAAACTTATCCCTAATAATTT
CTCTTTAGAAAAATGGAAACAATGATATGCAATCAAAACTTGTGTCTGCA
ATGAAATCAATCGGcatcactttgaaattttggagagacaagaaaaataa
attggaGTGGACATCATTAATGGGTAGTGATAAGAagagaatgttgaaaa
agtt Coding sequence (CDS) from alignment at sc0005970:138..891+ >TCONS_00044667 ID=TCONS_00044667|Name=TCONS_00044667|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0005970:138..891+ (Clytia hemisphaerica)
CAGTTTCTCTTGATGCTACTTGGTATGAAGCAGGCAACCTCCAACAATGC
ATGCATATACTGCGACATTAACAAGAATGACCGCCAAGATCCTTCAAAGT
CAGGAAAAAAACGAACCATCAATGCAAAATGGAGCAAGCAGCCAGGATGC
AAGGATGACCCAATCTTCTCAGATGTCCCGATTGATCATTATTGCGTTGA
TGAGCTGCATCTTTTGCTGAGGGTCACAGACCGGTTGGAGGATGGAATGT
TCCATACCATTATTGATATCGATGAAAAAAATGGAAACAATGATATGCAA
TCAAAACTTGTGTCTGCAATGAAATCAATCGGcatcactttgaaattttg
gagagacaagaaaaataaattggaGTGGACATCATTAATGGGTAGTGATA
AGAagagaatgttgaaaaagCAGTTTCTCTTGATGCTACTTGGTATGAAG
CAGGCAACCTCCAACAATGCATGCATATACTGCGACATTAACAAGAATGA
CCGCCAAGATCCTTCAAAGTCAGGAAAAAAACGAACCATCAATGCAAAAT
GGAGCAAGCAGCCAGGATGCAAGGATGACCCAATCTTCTCAGATGTCCCG
ATTGATCATTATTGCGTTGATGAGCTGCATCTTTTGCTGAGGGTCACAGA
CCGGTTGGAGGATGGAATGTTCCATACCATTATTGATATCGATGAAAAAA
ATGGAAACAATGATATGCAATCAAAACTTGTGTCTGCAATGAAATCAATC
GGcatcactttgaaattttggagagacaagaaaaataaattggaGTGGAC
ATCATTAATGGGTAGTGATAAGAagagaatgttgaaaaagCAGTTTCTCT
TGATGCTACTTGGTATGAAGCAGGCAACCTCCAACAATGCATGCATATAC
TGCGACATTAACAAGAATGACCGCCAAGATCCTTCAAAGTCAGGAAAAAA
ACGAACCATCAATGCAAAATGGAGCAAGCAGCCAGGATGCAAGGATGACC
CAATCTTCTCAGATGTCCCGATTGATCATTATTGCGTTGATGAGCTGCAT
CTTTTGCTGAGGGTCACAGACCGGTTGGAGGATGGAATGTTCCATACCAT
TATTGATATCGATGAAAAAAATGGAAACAATGATATGCAATCAAAACTTG
TGTCTGCAATGAAATCAATCGGcatcactttgaaattttggagagacaag
aaaaataaattggaGTGGACATCATTAATGGGTAGTGATAAGAagagaat
gttgaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044667-exon-sc0005970-1491911889:138..220 | TCONS_00044667-exon-sc0005970-1491911889:138..220 | Clytia hemisphaerica | exon |
| TCONS_00044667-exon-sc0005970-1510915933:138..220 | TCONS_00044667-exon-sc0005970-1510915933:138..220 | Clytia hemisphaerica | exon |
| TCONS_00044667-exon-sc0005970-1575043694:138..220 | TCONS_00044667-exon-sc0005970-1575043694:138..220 | Clytia hemisphaerica | exon |
| TCONS_00044667-exon-sc0005970-1491911889:416..608 | TCONS_00044667-exon-sc0005970-1491911889:416..608 | Clytia hemisphaerica | exon |
| TCONS_00044667-exon-sc0005970-1510915933:416..608 | TCONS_00044667-exon-sc0005970-1510915933:416..608 | Clytia hemisphaerica | exon |
| TCONS_00044667-exon-sc0005970-1575043694:416..608 | TCONS_00044667-exon-sc0005970-1575043694:416..608 | Clytia hemisphaerica | exon |
| TCONS_00044667-exon-sc0005970-1491911889:746..891 | TCONS_00044667-exon-sc0005970-1491911889:746..891 | Clytia hemisphaerica | exon |
| TCONS_00044667-exon-sc0005970-1510915933:746..891 | TCONS_00044667-exon-sc0005970-1510915933:746..891 | Clytia hemisphaerica | exon |
| TCONS_00044667-exon-sc0005970-1575043694:746..891 | TCONS_00044667-exon-sc0005970-1575043694:746..891 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005970 | supercontig | sc0005970:138..891 + |
Blast
The following BLAST results are available for this feature:
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