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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044660 ID=TCONS_00044660|Name=TCONS_00044660|organism=Clytia hemisphaerica|type=transcript|length=1017bp
cgggggttggaaaattttcgaaaaattaacagcGGGGGGGTGTTTATTTT
GAACCTGAGAGTACAAATACAATACTTATGACTGTTTGAATTAGAATGAA
TTGTGGCCTCGTCAAAAAATGATACACCCCTGTGTGATAAACCCTGTGGA
GCCTccaacccactggaaaatttgaacaaaatttcGTCTCCAGTCTCGTC
TCTCACTGGGTCTTGGAGCCTTGGAACaattagaatttttatccccattg
agattttgacaaaagaatttatccccgctgttggaaaaaaaatccaCCAG
GGTTTTGAGATTACTATGAGAAATCTTCATtcaaaattgaagatgaaaaa
gaaaagaaatcaacTCCTGCTGgaataatgtttttttatgtGCTAATTTT
GTATGTTTATACAATAATTCTCCGTTTTACACTTTTTAAAAATCCTGTCT
AAGTTAGCTCTTAGTAAAATTACAAATGCGAATAACTTTTGACAGTTTTC
ACATCAATTCCTCCTTATAGGCTTGTCAACCGTCTTCTTCAGAATCTACA
GAGAAAACAGATACCAAAACATCACCAGTAACAACGGAAAATCCAACACT
CAAACCTCTTAACAACTCTGCTCAGACATTGATGACGACTTCAATAGATA
CGACGACAACGACAGACGTGACAGAGCCGGGAATCGAAACGACAACGTCA
AGAGAAACTTCTAGTTATACGACGATAACGACAGACACGTCTGGATCGGG
ATCGGGATCAGGAACACCAAGCGAAGCACCTACTACGACTGGGACTGTGA
CAACAACCAAAGATGATATAGTTACTCCTAAGGAAGTTGAATGCGATTGG
TTCGAAAAGGGGATTAAAACAAATTATTTCCGAGAAGGAACACAAGTTGC
ATCAACAGAGGAATGTAAAAACAGTTGCTATGCTTTGAAAGAAAGAAGTA
ACAGCAATATTGGTGGAATTACAGTTGTTATTGACCAAAATCAATTGACT
ATGGAATGCTTTTGCCA Run BLAST on NCBI protein sequence of TCONS_00044660-protein >TCONS_00044660-protein ID=TCONS_00044660-protein|Name=TCONS_00044660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MTTSIDTTTTTDVTEPGIETTTSRETSSYTTITTDTSGSGSGSGTPSEAP
TTTGTVTTTKDDIVTPKEVECDWFEKGIKTNYFREGTQVASTEECKNSCY
ALKERSNSNIGGITVVIDQNQLTMECFC Run BLAST on NCBI transcript from alignment at sc0005956:1404..2984- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044660 ID=TCONS_00044660|Name=TCONS_00044660|organism=Clytia hemisphaerica|type=transcript|length=1581bp|location=Sequence derived from alignment at sc0005956:1404..2984- (Clytia hemisphaerica)
CGGGGGTTGGAAAATTTTCGAAAAATTAACAGCGGGGGGGTGTTTATTTT
GAACCTGAGAGTACAAATACAATACTTATGACTGTTTGAATTAGAATGAA
TTGTGGCCTCGTCAAAAAATGATACACCCCTGTGTGATAAACCCTGTGGA
GCCTCCAACCCACTGGAAAATTTGAACAAAATTTCGTCTCCAGTCTCGTC
TCTCACTGGGTCTTGGAGCCTTGGAACAATTAGAATTTTTATCCCCATTG
AGATTTTGACAAAAGAATTTATCCCCGCTGTTGGAAAAAAAATCCACCAG
GGTTTTGAGATTACTATGAGAAATCTTCATTCAAAATTGAAGATGAAAAA
GAAAAGAAATCAACTCCTGCTGGAATAATGTTTTTTTATGTGCTAATTTT
GTATGTTTATACAATAATTCTCCGTTTTACACTTTTTAAAAATCCTGTCT
AAGTTAGCTCTTAGTAAAATTACAAATGCGAATAACTTTTGACAGTTTTC
ACATCAATTCCTCCTTATAGGCTTGTCAACCGTCTTCTTCAGAATCTACA
GAGAAAACAGATACCAAAACATCACCAGTAACAACGGAAAATCCAACACT
CAAACCTCTTAACAACTCTGCTCAGACATTGATGACGACTTCAATAGATA
CGACGACAACGACAGACGTGACAGAGCCGGGAATCGAAACGACAACGTCA
AGAGAAACTTCTAGTTATACGACGATAACGACAGACACGTCTGGATCGGG
ATCGGGATCAGGAACACCAAGCGAAGCACCTACTACGACTGGGACTGTGA
CAACAACCAAAGATGATATAGTTACTCCTAAGGAAGGTTAGTTTATGGAT
GTCTCTTTAACGACATTTTTATATTTTTTCAAAAAATATGATATTCTTAT
AGAAGATATTCTTATTAAAAAAATGTGTGTCAATCGTGTAATCCCTTTAA
AGAGAGAAAGGTTGTCTGTACACAGACCCAGTATCTAGGGCTAATTTCAA
AATTCATTGCCGTAGAGGGTCTGTTGTCATTGTCTTTTCTTATTTGAGAT
TTTTCAAACTGATCGCTGCAATGAAGTGTTGGTGAAAGAGGGGAGACGAT
AAGAGAAGTGTTGCTATTTATAAATCAAACTTAATCGCAGAGGTCTCCGT
ACGGGAATTTTTTTTATCAAACAGACAACGCGCACAGAGTGTACTACGAA
GCGATAAATGTGAGATACACTCTGGTATAGAGTAAGAGAAAGGTGACTCA
ACCAAAAAACGCACAATTTGACCATGGGCACCGTAAACTGCACATGATCC
AAAGCATGCTCCTGAACAGTGGCTAGGTAGTAGAGATTCTTCATTCTCAT
CGGCCCTTAAAATAAAATCTATCTTCAGTACGTATTCTTTCTTTTTATAG
TTGAATGCGATTGGTTCGAAAAGGGGATTAAAACAAATTATTTCCGAGAA
GGAACACAAGTTGCATCAACAGAGGAATGTAAAAACAGTTGCTATGCTTT
GAAAGAAAGAAGTAACAGCAATATTGGTGGAATTACAGTTGTTATTGACC
AAAATCAATTGACTATGGAATGCTTTTGCCA Coding sequence (CDS) from alignment at sc0005956:1404..2984- >TCONS_00044660 ID=TCONS_00044660|Name=TCONS_00044660|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0005956:1404..2984- (Clytia hemisphaerica)
TTGAATGCGATTGGTTCGAAAAGGGGATTAAAACAAATTATTTCCGAGAA
GGAACACAAGTTGCATCAACAGAGGAATGTAAAAACAGTTGCTATGCTTT
GAAAGAAAGAAGTAACAGCAATATTGGTGGAATTACAGTTGTTATTGACC
AAAATCAATTGACTATGGAATGCTTTTGCATGACGACTTCAATAGATACG
ACGACAACGACAGACGTGACAGAGCCGGGAATCGAAACGACAACGTCAAG
AGAAACTTCTAGTTATACGACGATAACGACAGACACGTCTGGATCGGGAT
CGGGATCAGGAACACCAAGCGAAGCACCTACTACGACTGGGACTGTGACA
ACAACCAAAGATGATATAGTTACTCCTAAGGAAGTTGAATGCGATTGGTT
CGAAAAGGGGATTAAAACAAATTATTTCCGAGAAGGAACACAAGTTGCAT
CAACAGAGGAATGTAAAAACAGTTGCTATGCTTTGAAAGAAAGAAGTAAC
AGCAATATTGGTGGAATTACAGTTGTTATTGACCAAAATCAATTGACTAT
GGAATGCTTTTGCATGACGACTTCAATAGATACGACGACAACGACAGACG
TGACAGAGCCGGGAATCGAAACGACAACGTCAAGAGAAACTTCTAGTTAT
ACGACGATAACGACAGACACGTCTGGATCGGGATCGGGATCAGGAACACC
AAGCGAAGCACCTACTACGACTGGGACTGTGACAACAACCAAAGATGATA
TAGTTACTCCTAAGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044660-exon-sc0005956-1575043694:2149..2984 | TCONS_00044660-exon-sc0005956-1575043694:2149..2984 | Clytia hemisphaerica | exon |
| TCONS_00044660-exon-sc0005956-1575043694:1404..1584 | TCONS_00044660-exon-sc0005956-1575043694:1404..1584 | Clytia hemisphaerica | exon |
| TCONS_00044660-exon-sc0005956-1510915933:2149..2984 | TCONS_00044660-exon-sc0005956-1510915933:2149..2984 | Clytia hemisphaerica | exon |
| TCONS_00044660-exon-sc0005956-1510915933:1404..1584 | TCONS_00044660-exon-sc0005956-1510915933:1404..1584 | Clytia hemisphaerica | exon |
| TCONS_00044660-exon-sc0005956-1491911889:2149..2984 | TCONS_00044660-exon-sc0005956-1491911889:2149..2984 | Clytia hemisphaerica | exon |
| TCONS_00044660-exon-sc0005956-1491911889:1404..1584 | TCONS_00044660-exon-sc0005956-1491911889:1404..1584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005956 | supercontig | sc0005956:1404..2984 - |
Blast
The following BLAST results are available for this feature:
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