TCONS_00044652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044652
Unique NameTCONS_00044652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044652 ID=TCONS_00044652|Name=TCONS_00044652|organism=Clytia hemisphaerica|type=transcript|length=268bp
ACGGTACCGAAAACATCATTTCGATCCATCAGGCGGCACTTTCTCATACA
TTTCTATCCGTCGCTTCCGTAAATTTGGAACAATTGGTTTTTAGTGTAGA
GGATGTATACCAGATCTAAAATATTACGGAGATAATCTTGGCTTGAGTTT
CTGTTTCGATTACCTCCCTAatgtttaaattaggaaatttaaagaaaaga
tcggaaaatgagcgcgggctggaagcgttcaagaagcgttcaaacactcg
tttttcaagaagtcgttg
Run BLAST on NCBI

transcript from alignment at sc0005945:2663..2930

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044652 ID=TCONS_00044652|Name=TCONS_00044652|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0005945:2663..2930 (Clytia hemisphaerica)
caacgacttcttgaaaaacgagtgtttgaacgcttcttgaacgcttccag
cccgcgctcattttccgatcttttctttaaatttcctaatttaaacatTA
GGGAGGTAATCGAAACAGAAACTCAAGCCAAGATTATCTCCGTAATATTT
TAGATCTGGTATACATCCTCTACACTAAAAACCAATTGTTCCAAATTTAC
GGAAGCGACGGATAGAAATGTATGAGAAAGTGCCGCCTGATGGATCGAAA
TGATGTTTTCGGTACCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028268XLOC_028268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044652-exon-sc0005945-1491911889:2663..2930TCONS_00044652-exon-sc0005945-1491911889:2663..2930Clytia hemisphaericaexon
TCONS_00044652-exon-sc0005945-1510915933:2663..2930TCONS_00044652-exon-sc0005945-1510915933:2663..2930Clytia hemisphaericaexon
TCONS_00044652-exon-sc0005945-1575043694:2663..2930TCONS_00044652-exon-sc0005945-1575043694:2663..2930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005945supercontigsc0005945:2663..2930 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33274	0.568696	4.62218	8.39815	2.35937	3.10734	3.74888	2.80772	2.45719	2.4349	1.77253	1.16519	2.32714	3.22235	1.3246	4.61989	2.18897	1.34617	8.67913	6.4872	1.69157	1.65017	0	1.82375	0	2.79407	2.39898	4.2671	1.94187	2.63794
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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