TCONS_00044621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044621
Unique NameTCONS_00044621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044621 ID=TCONS_00044621|Name=TCONS_00044621|organism=Clytia hemisphaerica|type=transcript|length=465bp
GACCATCATGTTTATTTGGAAGGCACTCTGTTGAAACCAAACATGGTTAC
TCCAGGAAATTCGTGCTCAAAAAAAGCAACAGCTGAAGAGATTGGTTTAG
CTACTGTGACCGCCCTTCGAAGAACTGTTCCAGCCTGTATGCCAGGTGTC
ACCTTCCTTTCTGGTGGACAGTCTGAATTAGAAGCTACTGCTAACTTGAA
CGCCATGAACAAAGTGGATTTACTCCGACCATGGTCACTCACTTTCTCCT
ACGGACGTGCCCTTCAAGCAAGTGTATTGAAAGCATGGGCAGGAAAACCT
GAAAACGTTGCCGAGGCTCAAAAAGTCTTATTACATAGAGCTAAAATGAA
CAGTCTGGCTTGCCGTGGATTGTACGAGGGTGAGGAAAAGAGCGCGGCCG
CCGACGAATCGCTCTTTGTCGCCAACCATCAATATTAAAAAAGACATTTG
CCCTCCCTCTTGTGA
Run BLAST on NCBI

protein sequence of TCONS_00044621-protein

>TCONS_00044621-protein ID=TCONS_00044621-protein|Name=TCONS_00044621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
DHHVYLEGTLLKPNMVTPGNSCSKKATAEEIGLATVTALRRTVPACMPGV
TFLSGGQSELEATANLNAMNKVDLLRPWSLTFSYGRALQASVLKAWAGKP
ENVAEAQKVLLHRAKMNSLACRGLYEGEEKSAAADESLFVANHQY
Run BLAST on NCBI

transcript from alignment at sc0005890:1..819+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044621 ID=TCONS_00044621|Name=TCONS_00044621|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at sc0005890:1..819+ (Clytia hemisphaerica)
GACCATCATGTTTATTTGGAAGGCACTCTGTTGAAACCAAACATGGTTAC
TCCAGGtcagtatcaaaacaaaatttttatattgaagCTCTTTTCTTCTG
TGGCTTGGCAaggaacaattttttaaagttttaaagtttttaaaagtttc
aacAATTTGTTTAGGAAATTCGTGCTCAAAAAAAGCAACAGCTGAAGAGA
TTGGTTTAGCTACTGTGACCGCCCTTCGAAGAACTGTTCCAGCCTGTATG
CCAGGTGTCACCTTCCTTTCTGGTGGACAGTCTGAATTAGAAGCTACTGC
TAACTTGAACGCCATGAACAAAGTGGATTGTAAGTAgattttttattgta
aattgttTGTAGATGCTTTGAATTCCATGAGATGTGTTTAAAATCTATGA
CATACAGTACGTACCATTTCTGGGTATAAGGTATCTACTTTATTAATCAG
TATTCCAGAGGGCAAGATAAGTTCTTCGTTTTTCTGTACGTTTATCTACA
AAATCTCAGCAacctttttgaatattttaaatcattccatgaaaaacttt
aaatatttccttcttttTCCACAGTACTCCGACCATGGTCACTCACTTTC
TCCTACGGACGTGCCCTTCAAGCAAGTGTATTGAAAGCATGGGCAGGAAA
ACCTGAAAACGTTGCCGAGGCTCAAAAAGTCTTATTACATAGAGCTAAAA
TGAACAGTCTGGCTTGCCGTGGATTGTACGAGGGTGAGGAAAAGAGCGCG
GCCGCCGACGAATCGCTCTTTGTCGCCAACCATCAATATTAAAAAAGACA
TTTGCCCTCCCTCTTGTGA

Coding sequence (CDS) from alignment at sc0005890:1..819+

>TCONS_00044621 ID=TCONS_00044621|Name=TCONS_00044621|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0005890:1..819+ (Clytia hemisphaerica)
GACCATCATGTTTATTTGGAAGGCACTCTGTTGAAACCAAACATGGTTAC
TCCAGGAAATTCGTGCTCAAAAAAAGCAACAGCTGAAGAGATTGGTTTAG
CTACTGTGACCGCCCTTCGAAGAACTGTTCCAGCCTGTATGCCAGGTGTC
ACCTTCCTTTCTGGTGGACAGTCTGAATTAGAAGCTACTGCTAACTTGAA
CGCCATGAACAAAGTGGATTTACTCCGACCATGGTCACTCACTTTCTCCT
ACGGACGTGCCCTTCAAGCAAGTGTATTGAAAGCATGGGCAGGAAAACCT
GAAAACGTTGCCGAGGCTCAAAAAGTCTTATTACATAGAGCTAAAATGAA
CAGTCTGGCTTGCCGTGGATTGTACGAGGGTGAGGAAAAGAGCGCGGCCG
CCGACGAATCGCTCTTTGTCGCCAACCATCAATATTAAGACCATCATGTT
TATTTGGAAGGCACTCTGTTGAAACCAAACATGGTTACTCCAGGAAATTC
GTGCTCAAAAAAAGCAACAGCTGAAGAGATTGGTTTAGCTACTGTGACCG
CCCTTCGAAGAACTGTTCCAGCCTGTATGCCAGGTGTCACCTTCCTTTCT
GGTGGACAGTCTGAATTAGAAGCTACTGCTAACTTGAACGCCATGAACAA
AGTGGATTTACTCCGACCATGGTCACTCACTTTCTCCTACGGACGTGCCC
TTCAAGCAAGTGTATTGAAAGCATGGGCAGGAAAACCTGAAAACGTTGCC
GAGGCTCAAAAAGTCTTATTACATAGAGCTAAAATGAACAGTCTGGCTTG
CCGTGGATTGTACGAGGGTGAGGAAAAGAGCGCGGCCGCCGACGAATCGC
TCTTTGTCGCCAACCATCAATATTAAGACCATCATGTTTATTTGGAAGGC
ACTCTGTTGAAACCAAACATGGTTACTCCAGGAAATTCGTGCTCAAAAAA
AGCAACAGCTGAAGAGATTGGTTTAGCTACTGTGACCGCCCTTCGAAGAA
CTGTTCCAGCCTGTATGCCAGGTGTCACCTTCCTTTCTGGTGGACAGTCT
GAATTAGAAGCTACTGCTAACTTGAACGCCATGAACAAAGTGGATTTACT
CCGACCATGGTCACTCACTTTCTCCTACGGACGTGCCCTTCAAGCAAGTG
TATTGAAAGCATGGGCAGGAAAACCTGAAAACGTTGCCGAGGCTCAAAAA
GTCTTATTACATAGAGCTAAAATGAACAGTCTGGCTTGCCGTGGATTGTA
CGAGGGTGAGGAAAAGAGCGCGGCCGCCGACGAATCGCTCTTTGTCGCCA
ACCATCAATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028239XLOC_028239Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044621-proteinTCONS_00044621-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044621-exon-sc0005890-1491911889:1..55TCONS_00044621-exon-sc0005890-1491911889:1..55Clytia hemisphaericaexon
TCONS_00044621-exon-sc0005890-1510915933:1..55TCONS_00044621-exon-sc0005890-1510915933:1..55Clytia hemisphaericaexon
TCONS_00044621-exon-sc0005890-1575043694:1..55TCONS_00044621-exon-sc0005890-1575043694:1..55Clytia hemisphaericaexon
TCONS_00044621-exon-sc0005890-1491911889:165..329TCONS_00044621-exon-sc0005890-1491911889:165..329Clytia hemisphaericaexon
TCONS_00044621-exon-sc0005890-1510915933:165..329TCONS_00044621-exon-sc0005890-1510915933:165..329Clytia hemisphaericaexon
TCONS_00044621-exon-sc0005890-1575043694:165..329TCONS_00044621-exon-sc0005890-1575043694:165..329Clytia hemisphaericaexon
TCONS_00044621-exon-sc0005890-1491911889:575..819TCONS_00044621-exon-sc0005890-1491911889:575..819Clytia hemisphaericaexon
TCONS_00044621-exon-sc0005890-1510915933:575..819TCONS_00044621-exon-sc0005890-1510915933:575..819Clytia hemisphaericaexon
TCONS_00044621-exon-sc0005890-1575043694:575..819TCONS_00044621-exon-sc0005890-1575043694:575..819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005890supercontigsc0005890:1..819 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
785.548	805.078	581.382	553.875	252.002	184.111	222.205	235.021	365.99	322.803	632.463	463.106	337.121	327.299	327.688	274.724	298.446	271.686	156.307	168.214	277.787	261.974	276.455	368.359	331.801	351.679	191.873	228.52	194.077	169.902
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR000741FBA_I
IPR029768Aldolase_I_AS
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004332fructose-bisphosphate aldolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006096glycolytic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006096 glycolytic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004332 fructose-bisphosphate aldolase activity
Blast
[Close]
BLAST of TCONS_00044621 vs. Swiss-Prot (Human)
Match: ALDOA (Fructose-bisphosphate aldolase A OS=Homo sapiens GN=ALDOA PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 2.646e-63
Identity = 98/146 (67.12%), Postives = 117/146 (80.14%), Query Frame = 1 
Query:    1 DHHVYLEGTLLKPNMVTPGNSCSKKATAEEIGLATVTALRRTVPACMPGVTFLSGGQSELEATANLNAMNKVDLLRPWSLTFSYGRALQASVLKAWAGKPENVAEAQKVLLHRAKMNSLACRGLYEGE-EKSAAADESLFVANHQY 435
            DHH+YLEGTLLKPNMVTPG++C++K + EEI +ATVTALRRTVP  + G+TFLSGGQSE EA+ NLNA+NK  LL+PW+LTFSYGRALQAS LKAW GK EN+  AQ+  + RA  NSLAC+G Y    +  AAA ESLFV+NH Y
Sbjct:  219 DHHIYLEGTLLKPNMVTPGHACTQKFSHEEIAMATVTALRRTVPPAVTGITFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFVSNHAY 364
The following BLAST results are available for this feature:
BLAST of TCONS_00044621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALDOA2.646e-6367.12Fructose-bisphosphate aldolase A OS=Homo sapiens G... [more]
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