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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044619 ID=TCONS_00044619|Name=TCONS_00044619|organism=Clytia hemisphaerica|type=transcript|length=377bp
TCCGAGAGTATGTGTAATTAAAGGATGTGATATGATATTTTGTTCTCCAT
TAGAATGTAGAAGACCGCCAGCACAACCATCAGCAGGATACTAAGGAGAC
TGACATGTTGATCACACAGTTAGAAGCGCGATGTCAAAGTTTTGATGATG
AAGCTAAAGCGTTAagtgaagaaagtgaaaaacacAAAGATGAAAATAAC
ATGATCAAAAGCAAGTACACGAAACTAAAACAAATGGCGgtgaacttgaa
aaatcaatgtcAAACCTACGAAGAAGATTTTAAGAAATTGCAAGATGAAA
ATCAAAGCTTGGAAGCTGTtcgaaaaatcaaagaaaaagatgCCGAAAAC
GAAAAAGCAGTCCTCGAAGCAGTTGTA Run BLAST on NCBI transcript from alignment at sc0005888:1454..2889+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044619 ID=TCONS_00044619|Name=TCONS_00044619|organism=Clytia hemisphaerica|type=transcript|length=1436bp|location=Sequence derived from alignment at sc0005888:1454..2889+ (Clytia hemisphaerica)
TCCGAGAGTATGTGTAATTAAAGGATGTGATATGATATTTTGTTCTCCAT
TAGAATGTAGAAGACCGCCAGCACAACCATCAGCAGGATACTAAGGAGAC
TGACATGTTGATCACACAGTTAGAAGCGCGATGTCAAAGTTTTGATGATG
AAGCTAAAGCGTTAagtgaagaaagtgaaaaacacAAAGATGAAAATAAC
ATGATCAAAAGCAAGGTATGCCTTAGTGTCGTGATTATCCCTTGCGTtca
accatgaacatataaacgactggacatctatcttttattgtctctttgaa
gcgagcttcgttgccgcctgtatttcaaaattgatatgaaaaatccgaca
atattccgtcataattttatttctttgaattatttaggtaaaaggattaa
tagagcttgaacattattcccaattcgcaaaaaaattactctcgaatttt
ttcacaagtttgtaatatattttatcaacattttctaCTCTAAAaagcag
aatttcaactgcgtgtatacttttgaatcccttttgtcactccaataaat
ttttttatgacttgaaaaaaatagcttgccaaagtttagAGCCTGTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNagaatatcgaaattagaatgcgacactctctaaaattattagacac
ttttaagtcaaaatttagaaatattagtcgtagttttgacaagctgacga
tgattttgcctctgttatctttgttatgatatagataaaagacttgagaa
gagtagaacaacagagatttttgtcgaagttttgacgttgttagcaaggt
actcccaagtggtatatcatcaaaatctattgtttcatttcatgctttta
acgaggcggcaacgaagctagcagccctttctacaaaaagacaaaggaga
tggatgtccagtcgtttatatgttcatggttcaACTCTGATTATAACTTC
TGATAAAAATGAAGTTCAGGCCAAAGATTTTTTCACGACCccaaaataaa
tttctaaattttccttgctatttatttttcaaagtcgAGATATGCaggtt
ttcaatttcaaatttcttctcacgaaaaatagaaataaaatcgTTTAGTA
TAAAAGATCTCCTCTGTTTCTGCTTGCAAAATAAGGAATTGAAATAGtaa
ttttctactttaaaaTCCATATAGTACACGAAACTAAAACAAATGGCGgt
gaacttgaaaaatcaatgtcAAACCTACGAAGAAGATTTTAAGAAATTGC
AAGATGAAAATCAAAGCTTGGAAGCTGTtcgaaaaatcaaagaaaaagat
gCCGAAAACGAAAAAGCAGTCCTCGAAGCAGTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044619-exon-sc0005888-1491911889:1454..1668 | TCONS_00044619-exon-sc0005888-1491911889:1454..1668 | Clytia hemisphaerica | exon |
| TCONS_00044619-exon-sc0005888-1510915933:1454..1668 | TCONS_00044619-exon-sc0005888-1510915933:1454..1668 | Clytia hemisphaerica | exon |
| TCONS_00044619-exon-sc0005888-1575043694:1454..1668 | TCONS_00044619-exon-sc0005888-1575043694:1454..1668 | Clytia hemisphaerica | exon |
| TCONS_00044619-exon-sc0005888-1491911889:2728..2889 | TCONS_00044619-exon-sc0005888-1491911889:2728..2889 | Clytia hemisphaerica | exon |
| TCONS_00044619-exon-sc0005888-1510915933:2728..2889 | TCONS_00044619-exon-sc0005888-1510915933:2728..2889 | Clytia hemisphaerica | exon |
| TCONS_00044619-exon-sc0005888-1575043694:2728..2889 | TCONS_00044619-exon-sc0005888-1575043694:2728..2889 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005888 | supercontig | sc0005888:1454..2889 + |
Blast
The following BLAST results are available for this feature:
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