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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044607 ID=TCONS_00044607|Name=TCONS_00044607|organism=Clytia hemisphaerica|type=transcript|length=822bp
aatttttctTTTGTTTCTGCGAACACTTTCGTTCCAGTTAAACGTCTTCG
TCACTTACATAAAATTTTAGAACATTTCCGTAACCGTTTTTCGTCGATTT
GTATAAATGAACTCCGTCAATCACATATGTACAAAGAGATCAACAAACCG
GATAAACGTAAACTCGTCGTCGGAGACATAGTTTTGGTCAAAGACGACAC
ACACCTTCCGAGATCAAGATGGCCCATCGCTAAAGTTGAAGAACTTGTCA
GTGGAAAAGATGGCAACATCCGCGGTGCAAAGTTATCTACCGTCACCAAG
AATGGAAAACGAGGATCCATTCACCGCCCACTGGCCaaaatcattccttt
tgaaatcgTCGATAACCATCAACAGACGCCTGAGATACCTGTTTCACCCA
CCGCTACCGAACCAGCTCAAATGGTTGAAAACTGTGAGGAAGTAGTACAT
AATCGGGGGAGAACCAGTACGAGAAAGGCTGCAATCGAGGGACAGAACCT
GCGAAGATTACGAAATCAATATCATATCAANNNNNNNNNNNNNNNNNNNN
NNNNNNTgtaaaaacctcatttttacagttattttttcttataaataatt
ttctactttttctttacttttggCACGCGCCGTAAGCGCTCGCTTCGATG
TACttaattttcttattatttgaTTGGTagtttatcacgtgacttttgtG
ACTTATTTTTATTGGCTTATTTTTCACTTATAACGGCCTCGTGTTTAGAA
GGTCGCTCTCTTATTTCAGTATTTTATAGAAGATAAGGTGCATCATGAAA
TTTATTGAAGATATTGTTTGAA Run BLAST on NCBI protein sequence of TCONS_00044607-protein >TCONS_00044607-protein ID=TCONS_00044607-protein|Name=TCONS_00044607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
NFSFVSANTFVPVKRLRHLHKILEHFRNRFSSICINELRQSHMYKEINKP
DKRKLVVGDIVLVKDDTHLPRSRWPIAKVEELVSGKDGNIRGAKLSTVTK
NGKRGSIHRPLAKIIPFEIVDNHQQTPEIPVSPTATEPAQMVENCEEVVH
NRGRTSTRKAAIEGQNLRRLRNQYHIXXXXXXXXXX Run BLAST on NCBI transcript from alignment at sc0005871:2325..3146 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044607 ID=TCONS_00044607|Name=TCONS_00044607|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at sc0005871:2325..3146 (Clytia hemisphaerica)
TTCAAACAATATCTTCAATAAATTTCATGATGCACCTTATCTTCTATAAA
ATACTGAAATAAGAGAGCGACCTTCTAAACACGAGGCCGTTATAAGTGAA
AAATAAGCCAATAAAAATAAGTCacaaaagtcacgtgataaactACCAAt
caaataataagaaaattaaGTACATCGAAGCGAGCGCTTACGGCGCGTGc
caaaagtaaagaaaaagtagaaaattatttataagaaaaaataactgtaa
aaatgaggtttttacANNNNNNNNNNNNNNNNNNNNNNNNNNTTGATATG
ATATTGATTTCGTAATCTTCGCAGGTTCTGTCCCTCGATTGCAGCCTTTC
TCGTACTGGTTCTCCCCCGATTATGTACTACTTCCTCACAGTTTTCAACC
ATTTGAGCTGGTTCGGTAGCGGTGGGTGAAACAGGTATCTCAGGCGTCTG
TTGATGGTTATCGAcgatttcaaaaggaatgattttGGCCAGTGGGCGGT
GAATGGATCCTCGTTTTCCATTCTTGGTGACGGTAGATAACTTTGCACCG
CGGATGTTGCCATCTTTTCCACTGACAAGTTCTTCAACTTTAGCGATGGG
CCATCTTGATCTCGGAAGGTGTGTGTCGTCTTTGACCAAAACTATGTCTC
CGACGACGAGTTTACGTTTATCCGGTTTGTTGATCTCTTTGTACATATGT
GATTGACGGAGTTCATTTATACAAATCGACGAAAAACGGTTACGGAAATG
TTCTAAAATTTTATGTAAGTGACGAAGACGTTTAACTGGAACGAAAGTGT
TCGCAGAAACAAAagaaaaatt Coding sequence (CDS) from alignment at sc0005871:2325..3146 >TCONS_00044607 ID=TCONS_00044607|Name=TCONS_00044607|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0005871:2325..3146 (Clytia hemisphaerica)
ttacANNNNNNNNNNNNNNNNNNNNNNNNNNTTGATATGATATTGATTTC
GTAATCTTCGCAGGTTCTGTCCCTCGATTGCAGCCTTTCTCGTACTGGTT
CTCCCCCGATTATGTACTACTTCCTCACAGTTTTCAACCATTTGAGCTGG
TTCGGTAGCGGTGGGTGAAACAGGTATCTCAGGCGTCTGTTGATGGTTAT
CGAcgatttcaaaaggaatgattttGGCCAGTGGGCGGTGAATGGATCCT
CGTTTTCCATTCTTGGTGACGGTAGATAACTTTGCACCGCGGATGTTGCC
ATCTTTTCCACTGACAAGTTCTTCAACTTTAGCGATGGGCCATCTTGATC
TCGGAAGGTGTGTGTCGTCTTTGACCAAAACTATGTCTCCGACGACGAGT
TTACGTTTATCCGGTTTGTTGATCTCTTTGTACATATGTGATTGACGGAG
TTCATTTATACAAATCGACGAAAAACGGTTACGGAAATGTTCTAAAATTT
TATGTAAGTGACGAAGACGTTTAACTGGAACGAAAGTGTTCGCAGAAACA
AAagaaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044607-exon-sc0005871-1491911889:2325..3146 | TCONS_00044607-exon-sc0005871-1491911889:2325..3146 | Clytia hemisphaerica | exon |
| TCONS_00044607-exon-sc0005871-1510915933:2325..3146 | TCONS_00044607-exon-sc0005871-1510915933:2325..3146 | Clytia hemisphaerica | exon |
| TCONS_00044607-exon-sc0005871-1575043694:2325..3146 | TCONS_00044607-exon-sc0005871-1575043694:2325..3146 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005871 | supercontig | sc0005871:2325..3146 . |
Blast
The following BLAST results are available for this feature:
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