TCONS_00044605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044605
Unique NameTCONS_00044605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044605 ID=TCONS_00044605|Name=TCONS_00044605|organism=Clytia hemisphaerica|type=transcript|length=714bp
ATAAAGTGGAGATTGACTTAACATCGAAAAGCAGAACTGAAACTTTTAAA
TACCTTTACCTGGATATTTGGTTCGGCTGGGGGAGGTTGTCTGATACACA
TCCAGGAGTTGAAAATGTTACTCTATCCTCGCTCAAAATCAGTTATTTGA
ATTGCCCTGCAGAGACGAGAAACTTAGCGTTTTATCCTAATACGCCAGCA
TCAAGAGAGAAACTTCAACCTGTTTATGATGACGGGTTCTGTGTCACTAA
TGCTGTTAAACTAGAGGAAAATCTACCTCTTCAACGAACTTGCGATGATA
AAGCAAATGCTAAATTTGAAACCGGTGAATGTGTTTGTGATGCTACTTTC
GAGAAAGATTCTACCGGTGAAAATTGTCAATTGTGTGAAGAAGGTTATTA
CAAGAGCATTAAAGGACATGCGCAATGTCAAAAATGTGGGAAGAACAGTT
TCAATGATCGTTCAACTCGCTATGAATGCCGGTGTGGAAATGTAGAGTCA
GGCCCCACCTTTCGtttgaaagaagaagaagaaaagaaaaattgggcAGC
TGATTGCTTTTCTTACCCTACGAAAGTCAGAGATGTAAAAACTGATGCTT
CAAGTTTAACAAATGATACCATTGGACTTTCATGGAGCACACCATCGAAT
ATCGGAGAATTAAAACCCGTCATATACGTAGTGGAATGTATTCATCCAGT
GGCTGTTTGTAATT
Run BLAST on NCBI

protein sequence of TCONS_00044605-protein

>TCONS_00044605-protein ID=TCONS_00044605-protein|Name=TCONS_00044605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
KVEIDLTSKSRTETFKYLYLDIWFGWGRLSDTHPGVENVTLSSLKISYLN
CPAETRNLAFYPNTPASREKLQPVYDDGFCVTNAVKLEENLPLQRTCDDK
ANAKFETGECVCDATFEKDSTGENCQLCEEGYYKSIKGHAQCQKCGKNSF
NDRSTRYECRCGNVESGPTFRLKEEEEKKNWAADCFSYPTKVRDVKTDAS
SLTNDTIGLSWSTPSNIGELKPVIYVVECIHPVAVCN
Run BLAST on NCBI

transcript from alignment at sc0005869:662..3268-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044605 ID=TCONS_00044605|Name=TCONS_00044605|organism=Clytia hemisphaerica|type=transcript|length=2607bp|location=Sequence derived from alignment at sc0005869:662..3268- (Clytia hemisphaerica)
ATAAAGTGGAGATTGACTTAACATCGAAAAGCAGAACTGAAACTTTTAAA
TACCTTTACCTGGGTAAGAAACTGCAAAGGTTTGTGGGTAAATTTGATCT
GTTTGTAAATTTTGTCTTGTGGAGGCCCGGGGGGGGTCAAACCCAGGAAA
ATCGGGTACAAGCCGCTTTTGCAAGATTATAAAAAGGCTATCTATGATTC
AAAACTTTCTCTAATTTGAGGGAAAATCTCAGTGTCTTGAAGATCGAACT
AGAGCGAGGCATTGGGCTTTTCCCGAAAAAGATTTTTCCCCCACTGTCGA
GGATATTGATTTTTCGAAGTAACGAACCCCCTCGATATCCACTCCTAAAA
ATATGCTCAACCCCCTGGATATCCTCTCTTATGAAGATGCTTACCCCTGG
ATATGGTATTTTTCACTTGAAAAGACACTTTACCCTCTGGATATCTGCTC
CCTTGTAGATATTTAATCCCCTGTATATCCACTTTTGAACAAAAATCGTT
AACCCCCTGGATATCCGATATCCTCAACACAGACTATTTCTGGAAAAGCC
CAATTATAGATCTAAGTAATGGACATTTTTCTCAACAGATATTTGGTTCG
GCTGGGGGAGGTTGTCTGATACACATCCAGGAGTTGAAAATGTTACTCTA
TCCTCGCTCAAAATCAGTTATTTGAATTGCCCTGCAGAGACGAGAAACTT
AGCGTTTTATCCTAATACGCCAGCATCAAGAGAGAAACTTCAACCTGTTT
ATGATGACGGGTTCTGTGTCACTAATGCTGTTAAACTAGAGGAAAATCTA
CCTCTTCAACGAACTTGCGATGATAAAGCAAATGCTAAATTTGAAACCGG
TGAATGTGTTTGTGATGCTACTTTCGAGAAAGATTCTACCGGTGAAAATT
GTCAATGTAAGTAGAGTTTTATAAACTTTTTTTATGATTAAGAGAGACGT
AGACGGAGTAATCTGCTCAATAGATCTTATCGGAGTTTTTGATTTTTCTA
AAAAAGCGATGCATTTTGGGATTGTTTCGGGGGTATTACAATAGAAATCA
CTTAGAAATTCTTCGAGGGAATTCAATTTTAATACCCCTGAAACAATCCC
AGAATGCATCACTGTTTTTAGAAAAATCAAAAACTCCGATAAGGTCTATT
GGGGCTTCGTAGTCACGTGAATTTTGCTTTATAAAGAACGGATGTCCAAA
CTATTCACAGAATGTTAGATTGCTGTAAAATGTATTGTAAAGTCAAATAA
GAAATAAAGATGAATTTATTGGTAGCCGAAATATATATAGCCCCCTTTGT
TTAGAAAATACCAAGAAAAAGTGGTCTTTCTAGAATCATATAAAACAGCC
GTAATGACAGCTGCAAACTACGGTAATTGTCATTTTTGAATATCGAACCA
TCATGCAAGTATCTTTATCGTGGTCAGCCTTTCTTAATATATCTAACATA
AAATTTAAAAGAGTATGTCCTAGTAAGTGCGAGCGCAAACGCAAACCAAA
TAGGGAAATCAAACTAGAAAGATCGGGAGATCGAACCCGACTATTGCGAT
TAATCGGATTTACGCACAATTACAAATGAAAAACACTGATTTTAAGAAAC
TCCTTGACTGAAGTTCAATAAGACAAACCTTATCTATTGTTTTCACAGTG
TGTGAAGAAGGTTATTACAAGAGCATTAAAGGACATGCGCAATGTCAAAA
ATGTGGGAAGAACAGTTTCAATGATCGTTCAACTCGCTATGAATGCCGGT
GTGGAAATGTAGAGTCAGGCCCCACCTTTCGTTTGAAAGAAGAAGAAGAA
AAGAAAAATTGGGCAGCTGATTGCTTTTGTGAGTTATATATATTTGATAG
TAAAAGGTGAACAATGAATAGAACAGAAAAATAAACAATACAATCTTTAT
CAGAATGCTGTAGGATTTCAAGGCAAAAATCTGCTCAGAACGGTATCGTT
ATTTTCGATAAAATTGTTATCCCTTTGAAATAAATTCTTTTCCTTAGATT
ACCAGTGTCTAAAAGTCTTGTCAAAAATGCATCGGATATGACGTCCGGTG
TGTCTTTGGTGTAAGATTTAGGGCCTAATGTTTTCTTTCCTGTTTCATAA
TGTCCTCGGTATTAAAAAGTATTTCATCTTTACACCGGACACCAGATATT
TTGCACCGATGCATCTGCAGGGTCGTTCTATTTTTAGTATCTTTGAGAAT
TATTTTACATTTAAAGGTTATGTTTTTAAATAAGAGTGATATCGTTTCCT
TACTCATCAATTTTATTTCGCAAGCTTTTTTCACATTGGATTGACACGGA
TGTGGAGCAAGATGATCAGAAATAGGGAATTGTTTATATCAGTATAATAT
AACAATAGGCAGACACTCACCTGATATGAAATATGTGTCTGATATGAAAC
GGGAACACTATGTAAAAATAAAACATTTCACGTTCTCCATCTTCTCAACA
CCAGCTTACCCTACGAAAGTCAGAGATGTAAAAACTGATGCTTCAAGTTT
AACAAATGATACCATTGGACTTTCATGGAGCACACCATCGAATATCGGAG
AATTAAAACCCGTCATATACGTAGTGGAATGTATTCATCCAGTGGCTGTT
TGTAATT

Coding sequence (CDS) from alignment at sc0005869:662..3268-

>TCONS_00044605 ID=TCONS_00044605|Name=TCONS_00044605|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0005869:662..3268- (Clytia hemisphaerica)
CTTACCCTACGAAAGTCAGAGATGTAAAAACTGATGCTTCAAGTTTAACA
AATGATACCATTGGACTTTCATGGAGCACACCATCGAATATCGGAGAATT
AAAACCCGTCATATACGTAGTGGAATGTATTCATCCAGTGGCTGTTTGTA
ATTGTGTGAAGAAGGTTATTACAAGAGCATTAAAGGACATGCGCAATGTC
AAAAATGTGGGAAGAACAGTTTCAATGATCGTTCAACTCGCTATGAATGC
CGGTGTGGAAATGTAGAGTCAGGCCCCACCTTTCGTTTGAAAGAAGAAGA
AGAAAAGAAAAATTGGGCAGCTGATTGCTTTTATATTTGGTTCGGCTGGG
GGAGGTTGTCTGATACACATCCAGGAGTTGAAAATGTTACTCTATCCTCG
CTCAAAATCAGTTATTTGAATTGCCCTGCAGAGACGAGAAACTTAGCGTT
TTATCCTAATACGCCAGCATCAAGAGAGAAACTTCAACCTGTTTATGATG
ACGGGTTCTGTGTCACTAATGCTGTTAAACTAGAGGAAAATCTACCTCTT
CAACGAACTTGCGATGATAAAGCAAATGCTAAATTTGAAACCGGTGAATG
TGTTTGTGATGCTACTTTCGAGAAAGATTCTACCGGTGAAAATTGTCAAT
AAAGTGGAGATTGACTTAACATCGAAAAGCAGAACTGAAACTTTTAAATA
CCTTTACCTGGCTTACCCTACGAAAGTCAGAGATGTAAAAACTGATGCTT
CAAGTTTAACAAATGATACCATTGGACTTTCATGGAGCACACCATCGAAT
ATCGGAGAATTAAAACCCGTCATATACGTAGTGGAATGTATTCATCCAGT
GGCTGTTTGTAATTGTGTGAAGAAGGTTATTACAAGAGCATTAAAGGACA
TGCGCAATGTCAAAAATGTGGGAAGAACAGTTTCAATGATCGTTCAACTC
GCTATGAATGCCGGTGTGGAAATGTAGAGTCAGGCCCCACCTTTCGTTTG
AAAGAAGAAGAAGAAAAGAAAAATTGGGCAGCTGATTGCTTTTATATTTG
GTTCGGCTGGGGGAGGTTGTCTGATACACATCCAGGAGTTGAAAATGTTA
CTCTATCCTCGCTCAAAATCAGTTATTTGAATTGCCCTGCAGAGACGAGA
AACTTAGCGTTTTATCCTAATACGCCAGCATCAAGAGAGAAACTTCAACC
TGTTTATGATGACGGGTTCTGTGTCACTAATGCTGTTAAACTAGAGGAAA
ATCTACCTCTTCAACGAACTTGCGATGATAAAGCAAATGCTAAATTTGAA
ACCGGTGAATGTGTTTGTGATGCTACTTTCGAGAAAGATTCTACCGGTGA
AAATTGTCAATAAAGTGGAGATTGACTTAACATCGAAAAGCAGAACTGAA
ACTTTTAAATACCTTTACCTGGCTTACCCTACGAAAGTCAGAGATGTAAA
AACTGATGCTTCAAGTTTAACAAATGATACCATTGGACTTTCATGGAGCA
CACCATCGAATATCGGAGAATTAAAACCCGTCATATACGTAGTGGAATGT
ATTCATCCAGTGGCTGTTTGTAATTGTGTGAAGAAGGTTATTACAAGAGC
ATTAAAGGACATGCGCAATGTCAAAAATGTGGGAAGAACAGTTTCAATGA
TCGTTCAACTCGCTATGAATGCCGGTGTGGAAATGTAGAGTCAGGCCCCA
CCTTTCGTTTGAAAGAAGAAGAAGAAAAGAAAAATTGGGCAGCTGATTGC
TTTTATATTTGGTTCGGCTGGGGGAGGTTGTCTGATACACATCCAGGAGT
TGAAAATGTTACTCTATCCTCGCTCAAAATCAGTTATTTGAATTGCCCTG
CAGAGACGAGAAACTTAGCGTTTTATCCTAATACGCCAGCATCAAGAGAG
AAACTTCAACCTGTTTATGATGACGGGTTCTGTGTCACTAATGCTGTTAA
ACTAGAGGAAAATCTACCTCTTCAACGAACTTGCGATGATAAAGCAAATG
CTAAATTTGAAACCGGTGAATGTGTTTGTGATGCTACTTTCGAGAAAGAT
TCTACCGGTGAAAATTGTCAATAAAGTGGAGATTGACTTAACATCGAAAA
GCAGAACTGAAACTTTTAAATACCTTTACCTGGCTTACCCTACGAAAGTC
AGAGATGTAAAAACTGATGCTTCAAGTTTAACAAATGATACCATTGGACT
TTCATGGAGCACACCATCGAATATCGGAGAATTAAAACCCGTCATATACG
TAGTGGAATGTATTCATCCAGTGGCTGTTTGTAATTGTGTGAAGAAGGTT
ATTACAAGAGCATTAAAGGACATGCGCAATGTCAAAAATGTGGGAAGAAC
AGTTTCAATGATCGTTCAACTCGCTATGAATGCCGGTGTGGAAATGTAGA
GTCAGGCCCCACCTTTCGTTTGAAAGAAGAAGAAGAAAAGAAAAATTGGG
CAGCTGATTGCTTTTATATTTGGTTCGGCTGGGGGAGGTTGTCTGATACA
CATCCAGGAGTTGAAAATGTTACTCTATCCTCGCTCAAAATCAGTTATTT
GAATTGCCCTGCAGAGACGAGAAACTTAGCGTTTTATCCTAATACGCCAG
CATCAAGAGAGAAACTTCAACCTGTTTATGATGACGGGTTCTGTGTCACT
AATGCTGTTAAACTAGAGGAAAATCTACCTCTTCAACGAACTTGCGATGA
TAAAGCAAATGCTAAATTTGAAACCGGTGAATGTGTTTGTGATGCTACTT
TCGAGAAAGATTCTACCGGTGAAAATTGTCAATAAAGTGGAGATTGACTT
AACATCGAAAAGCAGAACTGAAACTTTTAAATACCTTTACCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028223XLOC_028223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044605-exon-sc0005869-1575043694:3206..3268TCONS_00044605-exon-sc0005869-1575043694:3206..3268Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1575043694:2363..2680TCONS_00044605-exon-sc0005869-1575043694:2363..2680Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1575043694:1441..1620TCONS_00044605-exon-sc0005869-1575043694:1441..1620Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1575043694:662..814TCONS_00044605-exon-sc0005869-1575043694:662..814Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1510915933:3206..3268TCONS_00044605-exon-sc0005869-1510915933:3206..3268Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1510915933:2363..2680TCONS_00044605-exon-sc0005869-1510915933:2363..2680Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1510915933:1441..1620TCONS_00044605-exon-sc0005869-1510915933:1441..1620Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1510915933:662..814TCONS_00044605-exon-sc0005869-1510915933:662..814Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1491911889:3206..3268TCONS_00044605-exon-sc0005869-1491911889:3206..3268Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1491911889:2363..2680TCONS_00044605-exon-sc0005869-1491911889:2363..2680Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1491911889:1441..1620TCONS_00044605-exon-sc0005869-1491911889:1441..1620Clytia hemisphaericaexon
TCONS_00044605-exon-sc0005869-1491911889:662..814TCONS_00044605-exon-sc0005869-1491911889:662..814Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044605-proteinTCONS_00044605-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005869supercontigsc0005869:662..3268 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.108645	0.155643	1.28289	0.49119	0	0.181565	1.49505	2.15469	1.54379	1.90324	5.77447	5.1198	2.94324	5.83797	1.52323	2.18866	1.44744	2.33146	0	0	0.161101	0.0732322	0	0	0	0	0.152406	0.871256
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
Blast
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BLAST of TCONS_00044605 vs. Swiss-Prot (Human)
Match: EPHA3 (Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.132e-16
Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 3 
Query:  117 VTLSSLKISYLNCPAETRNLAFYPNT-PASREKLQPVYDDGFCVTNAVKLEENLPLQRTCDDKANAKFETGECVCDATFEKDSTGENCQLCEEGYYKSIKGHAQCQKCGKNSFNDRSTRYECRCGNVESGPTFRLKEEEEKKNWAADCFSYPTKVRDVKTDASSLTNDTIGLSWSTPSNIGELKPVIYVVEC 689
            V L S+++ +  CP   +NLA +P+T P   + L  V   G CV N+   +E  P +  C  +       G+C C+A +E+   G  CQ C  G+YK++ G+ +C KC  +S         CRC N      FR     +K   +  C   P+  R+V    S++   ++ L WS P + G  K V + + C
Sbjct:  190 VALVSVRVYFKKCPFTVKNLAMFPDTVPMDSQSLVEV--RGSCVNNS---KEEDPPRMYCSTEGEWLVPIGKCSCNAGYEE--RGFMCQACRPGFYKALDGNMKCAKCPPHSSTQEDGSMNCRCEN----NYFR----ADKDPPSMACTRPPSSPRNV---ISNINETSVILDWSWPLDTGGRKDVTFNIIC 363
The following BLAST results are available for this feature:
BLAST of TCONS_00044605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EPHA37.132e-1629.69Ephrin type-A receptor 3 OS=Homo sapiens GN=EPHA3 ... [more]
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