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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044604 ID=TCONS_00044604|Name=TCONS_00044604|organism=Clytia hemisphaerica|type=transcript|length=537bp
CAGCAAATATACAGACGACACAACAGAAGAAGAAGCATATGGATGTCCAG
AATGCAAAGCTTCATACACCATCGCTCAGGCACGACGCTCTGCAACAGCT
GATCGATTGATTTTGAATACAATGGAAGTGAAATGCATCATGTACATTCA
CGGTTGTCCTTGGACTGGTTTGATCAAAGACTACCATACCTCACATAAAG
CTGAATGCAGCTTCTCAAGTGTCCGATGTCCATTCCAAGGCTGTGATAAA
ATTGTTCACCGCACGCTCATAGAAGATCACGAAGAAAATTGTTCGTTTAG
ATATAGTGAATGTCCGATATGTAATATCCATGTTGACTGGAAAAACAAGG
ATCATGTTTGTATGATACCGTGTCCAAATAAGGGATGCAATGAATTAATC
GAAAAATCGCAGGTAAGAATAttcagaccatgttcacacgttgcCGTTAC
CGTTCCGTTTCActccggtatgatttttgttacggatcgagtgtgttcat
attggtttcggaacgtttcagagcaagaaaacggagc Run BLAST on NCBI protein sequence of TCONS_00044604-protein >TCONS_00044604-protein ID=TCONS_00044604-protein|Name=TCONS_00044604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
SKYTDDTTEEEAYGCPECKASYTIAQARRSATADRLILNTMEVKCIMYIH
GCPWTGLIKDYHTSHKAECSFSSVRCPFQGCDKIVHRTLIEDHEENCSFR
YSECPICNIHVDWKNKDHVCMIPCPNKGCNELIEKSQVRIFRPCSHVAVT
VPFHSGMIFVTDRVCSYWFRNVSEQENG Run BLAST on NCBI transcript from alignment at sc0005868:212..2575+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044604 ID=TCONS_00044604|Name=TCONS_00044604|organism=Clytia hemisphaerica|type=transcript|length=2364bp|location=Sequence derived from alignment at sc0005868:212..2575+ (Clytia hemisphaerica)
CAGCAAATATACAGACGACACAACAGAAGAAGAAGCATATGGATGTCCAG
AATGCAAAGCTTCATACACCATCGCTCAGGTTTGctgatttcttttcaat
taGAATATTTCAAACGTTTTACTTTTCAAACGTTATACTGCCAAACATTT
TTCGGTCGCAGAAACCATAAGGacacccttgtgtcacagacccggtggga
ccccagttccactggaaaatttagcaagAATTCCATTCCTGGAAGGAAAA
ATaccttagaatttcagccccactgggaaattgactttgatttcatcccc
attcgaaaTTCAATGTTCAAAAATTGCACTCCAAAACCATCCTCACTGGA
TTTTTTAGCCTTGGAACAATAGAATTTCCATCCTCATTGGGATTTCAATA
GACATTTTTATCTGCGCTCTGGGAAAAAATTATACTGGGCCTGTGAGACA
TGGGTGTATAAGAAGTTGTAAAACAGCTCCTTATTGTCCTTACTTGTACA
GTCAGTGATAGAGGTATTCGACCTCGATTTTAGGCACGACGCTCTGCAAC
AGCTGATCGATTGATTTTGAATACAATGGAAGTGAAATGCATCATGTACA
TTCACGGTTGTCCTTGGACTGGTTTGATCAAAGACTACCATGTAAAATTT
TTGTGTTTTTCTTCCGGGGGGGGGGGGTACTTGGGCAAGATTGGGGTACG
GGGATGTGCCGAATGGTACCTTTTTGGGGGAACTCGGGAAGAAAATGTGG
AAAACTTTGGAATTTCATCTCCCTTTAGGATCGACCTTTTTCGAAAATTT
TGACAAAACTTTTCAAAAGAACAAGTGTCCAACAACTTCAGCGGCACACC
CCTGTCGGTCGGCAAAAGTAGTACCCCCCCCGGGATCATTTCTTTCGTCT
GACTCTGGTGatcttttaaattcaatttccacaaaaatttaaaaaacaca
tatttctttatttttggacGTAAGGGCCAGTGTATGACGTATTTGAACct
atacgttttttttaaaagaatatcttctataagaatatcagggtgaaaat
tggccaaatcataagaatatcctaagaataccctctagggtgagtttTAC
TCAGTCAATGAGaataaaactgtcatttttcaatGTATACGTATATTAGA
ATTACTCAAGCTGTCTAGAAAGGAAATTTTACTCTGAAATAATAAGAATA
CGTTAacaatatttcaccctcaattttggcaatttcttaagaatacttga
ccctcagagtacattattcttataaaataaagcgCGTATCGGAGCTCTAA
AATTAAATCGGTTCATCAATTTTCTCCCATAGACCTCACATAAAGCTGAA
TGCAGCTTCTCAAGTGTCCGATGTCCATTCCAAGGCTGTGATAAAATTGT
TCACCGCACGCTCATAGAAGATCACGAAGAAAATTGTTCGTTTAGATATA
GTGAATGTCCGATATGTAATATCCATGTTGACTGGAAAAACAAGGTATCA
GATTCACTCTCCTTTTGAGAAACCCCTGAAAAGTTAAATCTTCACTAGAC
TTTTATTTCTTCGCTTTTGATGACAGGAAGGTTCGATCTTGTGGTAAGAC
AAACATGTAGAAGGAGCTTGAACAAAAGCACTCGTGGTCTTAAACAGCCG
ACATACTTCACGAATTAAACTATTTGTTGAAtggtaaaaaatctgtgacC
AAAGGNCCGACATACTTCACGAATTAAACTATTTGTTGAAtggtaaaaaa
tctgtgaccaaagggctattccagaaaaaaaaattataccccCTAGGTTT
AggagatctttttttaaaaagatgacCCCCCCTGgattattttccaattt
ttcaggacccccttgAATTTTTACTCCCATTTCTTTGGACCACCCTGTAT
TTTCGACCCCGTTATACTGACCACTCTGGATTTACAACccgattttactg
attttttattttccagaccaccctagacatcacacctcctcaacataggg
ggtacagactatttttggaatagcccaatgtaTACACGTTTACAATGTGT
CGACTCCGTCGCTATATTAAGGCcttaattttgatgttttaatcAGTATT
TGGCCAGTATTAGTTTCTATTCCAAGCTAAACATACGAATTTTAATCTTG
AGAATTCTAATCTTCATTTTATTTAGGATCATGTTTGTATGATACCGTGT
CCAAATAAGGGATGCAATGAATTAATCGAAAAATCGCAGGTAAGAATAtt
cagaccatgttcacacgttgcCGTTACCGTTCCGTTTCActccggtatga
tttttgttacggatcgagtgtgttcatattggtttcggaacgtttcagag
caagaaaacggagc Coding sequence (CDS) from alignment at sc0005868:212..2575+ >TCONS_00044604 ID=TCONS_00044604|Name=TCONS_00044604|organism=Clytia hemisphaerica|type=CDS|length=2136bp|location=Sequence derived from alignment at sc0005868:212..2575+ (Clytia hemisphaerica)
AGCAAATATACAGACGACACAACAGAAGAAGAAGCATATGGATGTCCAGA
ATGCAAAGCTTCATACACCATCGCTCAGGCACGACGCTCTGCAACAGCTG
ATCGATTGATTTTGAATACAATGGAAGTGAAATGCATCATGTACATTCAC
GGTTGTCCTTGGACTGGTTTGATCAAAGACTACCATACCTCACATAAAGC
TGAATGCAGCTTCTCAAGTGTCCGATGTCCATTCCAAGGCTGTGATAAAA
TTGTTCACCGCACGCTCATAGAAGATCACGAAGAAAATTGTTCGTTTAGA
TATAGTGAATGTCCGATATGTAATATCCATGTTGACTGGAAAAACAAGGA
TCATGTTTGTATGATACCGTGTCCAAATAAGGGATGCAATGAATTAATCG
AAAAATCGCAGGTAAGAATAttcagaccatgttcacacgttgcCGTTACC
GTTCCGTTTCActccggtatgatttttgttacggatcgagtgtgttcata
ttggtttcggaacgtttcagagcaagaaaacggaAGCAAATATACAGACG
ACACAACAGAAGAAGAAGCATATGGATGTCCAGAATGCAAAGCTTCATAC
ACCATCGCTCAGGCACGACGCTCTGCAACAGCTGATCGATTGATTTTGAA
TACAATGGAAGTGAAATGCATCATGTACATTCACGGTTGTCCTTGGACTG
GTTTGATCAAAGACTACCATACCTCACATAAAGCTGAATGCAGCTTCTCA
AGTGTCCGATGTCCATTCCAAGGCTGTGATAAAATTGTTCACCGCACGCT
CATAGAAGATCACGAAGAAAATTGTTCGTTTAGATATAGTGAATGTCCGA
TATGTAATATCCATGTTGACTGGAAAAACAAGGATCATGTTTGTATGATA
CCGTGTCCAAATAAGGGATGCAATGAATTAATCGAAAAATCGCAGGTAAG
AATAttcagaccatgttcacacgttgcCGTTACCGTTCCGTTTCActccg
gtatgatttttgttacggatcgagtgtgttcatattggtttcggaacgtt
tcagagcaagaaaacggaAGCAAATATACAGACGACACAACAGAAGAAGA
AGCATATGGATGTCCAGAATGCAAAGCTTCATACACCATCGCTCAGGCAC
GACGCTCTGCAACAGCTGATCGATTGATTTTGAATACAATGGAAGTGAAA
TGCATCATGTACATTCACGGTTGTCCTTGGACTGGTTTGATCAAAGACTA
CCATACCTCACATAAAGCTGAATGCAGCTTCTCAAGTGTCCGATGTCCAT
TCCAAGGCTGTGATAAAATTGTTCACCGCACGCTCATAGAAGATCACGAA
GAAAATTGTTCGTTTAGATATAGTGAATGTCCGATATGTAATATCCATGT
TGACTGGAAAAACAAGGATCATGTTTGTATGATACCGTGTCCAAATAAGG
GATGCAATGAATTAATCGAAAAATCGCAGGTAAGAATAttcagaccatgt
tcacacgttgcCGTTACCGTTCCGTTTCActccggtatgatttttgttac
ggatcgagtgtgttcatattggtttcggaacgtttcagagcaagaaaacg
gaAGCAAATATACAGACGACACAACAGAAGAAGAAGCATATGGATGTCCA
GAATGCAAAGCTTCATACACCATCGCTCAGGCACGACGCTCTGCAACAGC
TGATCGATTGATTTTGAATACAATGGAAGTGAAATGCATCATGTACATTC
ACGGTTGTCCTTGGACTGGTTTGATCAAAGACTACCATACCTCACATAAA
GCTGAATGCAGCTTCTCAAGTGTCCGATGTCCATTCCAAGGCTGTGATAA
AATTGTTCACCGCACGCTCATAGAAGATCACGAAGAAAATTGTTCGTTTA
GATATAGTGAATGTCCGATATGTAATATCCATGTTGACTGGAAAAACAAG
GATCATGTTTGTATGATACCGTGTCCAAATAAGGGATGCAATGAATTAAT
CGAAAAATCGCAGGTAAGAATAttcagaccatgttcacacgttgcCGTTA
CCGTTCCGTTTCActccggtatgatttttgttacggatcgagtgtgttca
tattggtttcggaacgtttcagagcaagaaaacgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044604-exon-sc0005868-1491911889:212..290 | TCONS_00044604-exon-sc0005868-1491911889:212..290 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1510915933:212..290 | TCONS_00044604-exon-sc0005868-1510915933:212..290 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1575043694:212..290 | TCONS_00044604-exon-sc0005868-1575043694:212..290 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1491911889:745..852 | TCONS_00044604-exon-sc0005868-1491911889:745..852 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1510915933:745..852 | TCONS_00044604-exon-sc0005868-1510915933:745..852 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1575043694:745..852 | TCONS_00044604-exon-sc0005868-1575043694:745..852 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1491911889:1544..1705 | TCONS_00044604-exon-sc0005868-1491911889:1544..1705 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1510915933:1544..1705 | TCONS_00044604-exon-sc0005868-1510915933:1544..1705 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1575043694:1544..1705 | TCONS_00044604-exon-sc0005868-1575043694:1544..1705 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1491911889:2388..2575 | TCONS_00044604-exon-sc0005868-1491911889:2388..2575 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1510915933:2388..2575 | TCONS_00044604-exon-sc0005868-1510915933:2388..2575 | Clytia hemisphaerica | exon |
| TCONS_00044604-exon-sc0005868-1575043694:2388..2575 | TCONS_00044604-exon-sc0005868-1575043694:2388..2575 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005868 | supercontig | sc0005868:212..2575 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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