TCONS_00044601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044601
Unique NameTCONS_00044601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044601 ID=TCONS_00044601|Name=TCONS_00044601|organism=Clytia hemisphaerica|type=transcript|length=595bp
ctacaaaaataaagaaaattttcaaagggttaagactttacaatttgtaa
taAACACTAGTTAAAACCTATGACTTCATAGGGTGGATTCAAGGTGGGTT
CAAAGAAGAGGTGTCTAGCATATTTTTCCTGAAATCAAAAGACATTTTAG
CACCTTGTATAATAAGCCTGACTACTTTTAATACCTAGCAATGTCTCCCG
TCGTAAAACAAGGGACATATTTACGACCTGAGAAAGACGATCCAAGCTTT
CTAACTTTTCACAAATCTGGAAATTGAAGAGTGTTATAACTTATGGTCAT
TGTATCTTATAAGGTAGAATAAAAAGGGTCTTGAATTCATGGTTCTGTAA
GTGAAACTTCTTAAATTCTCAGTAAACTATAACAGAGAAGTGGATCTCAA
AAGAGTTCATACAgtcgactctcgctaattcgaacttctatcatGCGAAT
CTTTCTATATTTCGAATTAATTATCATTCCCCTTCAATGAAAATCAGAAT
AAAACAAGTTCTTTAATTCGGatttctctataattcgaataaattaaatt
aacccttcgagttcgaattagaaaTGTAACTGTATATATGAAGGT
Run BLAST on NCBI

transcript from alignment at sc0005864:2..596

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044601 ID=TCONS_00044601|Name=TCONS_00044601|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0005864:2..596 (Clytia hemisphaerica)
ACCTTCATATATACAGTTACAtttctaattcgaactcgaagggttaattt
aatttattcgaattatagagaaatCCGAATTAAAGAACTTGTTTTATTCT
GATTTTCATTGAAGGGGAATGATAATTAATTCGAAATATAGAAAGATTCG
CatgatagaagttcgaattagcgagagtcgacTGTATGAACTCTTTTGAG
ATCCACTTCTCTGTTATAGTTTACTGAGAATTTAAGAAGTTTCACTTACA
GAACCATGAATTCAAGACCCTTTTTATTCTACCTTATAAGATACAATGAC
CATAAGTTATAACACTCTTCAATTTCCAGATTTGTGAAAAGTTAGAAAGC
TTGGATCGTCTTTCTCAGGTCGTAAATATGTCCCTTGTTTTACGACGGGA
GACATTGCTAGGTATTAAAAGTAGTCAGGCTTATTATACAAGGTGCTAAA
ATGTCTTTTGATTTCAGGAAAAATATGCTAGACACCTCTTCTTTGAACCC
ACCTTGAATCCACCCTATGAAGTCATAGGTTTTAACTAGTGTTtattaca
aattgtaaagtcttaaccctttgaaaattttctttatttttgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028219XLOC_028219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044601-exon-sc0005864-1491911889:2..596TCONS_00044601-exon-sc0005864-1491911889:2..596Clytia hemisphaericaexon
TCONS_00044601-exon-sc0005864-1510915933:2..596TCONS_00044601-exon-sc0005864-1510915933:2..596Clytia hemisphaericaexon
TCONS_00044601-exon-sc0005864-1575043694:2..596TCONS_00044601-exon-sc0005864-1575043694:2..596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005864supercontigsc0005864:2..596 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275734	0	0.104067	0	0.123947	0.39178	0.945331	0.995634	0.387259	0.671556	0.186237	0.367274	0.305636	0.380888	0.887234	0.89613	0.137995	0.353601	0.293111	0.10224	0.17773	0	0.316151	0.862281	0.098681	1.40913	0	0.134501	1.83626	1.45511
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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