TCONS_00044588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044588
Unique NameTCONS_00044588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044588 ID=TCONS_00044588|Name=TCONS_00044588|organism=Clytia hemisphaerica|type=transcript|length=264bp
AAAAAGAAAGAGGAAAGCAAAAACTTGATCAGTATCAAAGATGATAAAAT
AATAGAcacatttatcaaaaatttcaaggCATGATATGATGAGAATTCTT
TGTCGAGTTTATCTATATGCCTTTGCATTTGAGAAATTTGGGTTTGTATT
GTATTGATACCTAACAACtaaatatttatattcaaaAATATGTTGTAGAG
AAAATTTACTTAGTTCATTAGCTTGTGGAATATATATATAATACCAATTA
CGATAAGAAGCTTA
Run BLAST on NCBI

transcript from alignment at sc0005843:196..459

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044588 ID=TCONS_00044588|Name=TCONS_00044588|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at sc0005843:196..459 (Clytia hemisphaerica)
TAAGCTTCTTATCGTAATTGGTATTATATATATATTCCACAAGCTAATGA
ACTAAGTAAATTTTCTCTACAACATATTtttgaatataaatatttaGTTG
TTAGGTATCAATACAATACAAACCCAAATTTCTCAAATGCAAAGGCATAT
AGATAAACTCGACAAAGAATTCTCATCATATCATGccttgaaatttttga
taaatgtgTCTATTATTTTATCATCTTTGATACTGATCAAGTTTTTGCTT
TCCTCTTTCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028207XLOC_028207Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044588-exon-sc0005843-1491911889:196..459TCONS_00044588-exon-sc0005843-1491911889:196..459Clytia hemisphaericaexon
TCONS_00044588-exon-sc0005843-1510915933:196..459TCONS_00044588-exon-sc0005843-1510915933:196..459Clytia hemisphaericaexon
TCONS_00044588-exon-sc0005843-1575043694:196..459TCONS_00044588-exon-sc0005843-1575043694:196..459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005843supercontigsc0005843:196..459 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.47316	3.01465	4.20036	0	0	0	0.79491	0	0.521022	0	0	0	0	0	0	0	0	0.475737	0.657257	0.687772	1.1956	0.874755	2.12676	4.51158	0.663831	1.77736	1.6956	0.904794	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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