TCONS_00044571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044571
Unique NameTCONS_00044571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044571 ID=TCONS_00044571|Name=TCONS_00044571|organism=Clytia hemisphaerica|type=transcript|length=232bp
AAGCAATGTCGAGTTACAACCATTATCAAGTTCAAAATGTCAAGACATCT
CCGCTTATTTTGACTTTGATCGAAGCTGGTCAGGCACAATCATTCACGTC
TGCAGTGGAAAGATGCTTTGTCCGGCGTCCACAGCAGCCTCTGGAAACCC
TATCACGCTTGTTGATGTCCATGATTGCACATTCAGTGATCAGTATTTGG
ATGGACGCAAAAAATTCCGCAGAAATCCATGT
Run BLAST on NCBI

transcript from alignment at sc0005807:2763..3485-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044571 ID=TCONS_00044571|Name=TCONS_00044571|organism=Clytia hemisphaerica|type=transcript|length=723bp|location=Sequence derived from alignment at sc0005807:2763..3485- (Clytia hemisphaerica)
AAGCAATGTCGAGTTACAACCATTATCAAGTTCAAAATGTCAAGACATCT
CCGCTTATTTTGACTTTGATCGAAGCTGGTCAGGTGAGAACTTTATTATG
ATAATTTGAAGTTGAATTTTTCTAAAATCCTTTCGATTTTTAATACAATA
AAAAAAATTAACTAGGCCATTCATCATCATAAAAAATGTTTCTACCGATT
GACAAAGATTGACTCTCAATGGACAATGACAATACGCAAAATGGGTGACG
CATCTCAACTGGTTGGATTTCCGTCTACAAACGGAAAGTTACAACACTGG
TGTCACTCAAACAATAATTAAATTGAATGAATGAATGAATGAATGAATTA
TTGAAATTTATGAAATTTTTCTTATGGAGAAAACTTGGTCTAATTTGTGA
AAATCTTTGTCACCAGCTCCTTGATGTTGACCAGAAAAAAATTTCGTCTT
AGAAAACTTCATCAATTGCGTCATTTTCCCTGACTAAGTTTTCTCTTTAA
GGTAACACGAAATTTCATGTTATCATCAACAACGGAGGAAAGTGAATAAA
AAGTTTTTTTAAATATATTTCCAGGCACAATCATTCACGTCTGCAGTGGA
AAGATGCTTTGTCCGGCGTCCACAGCAGCCTCTGGAAACCCTATCACGCT
TGTTGATGTCCATGATTGCACATTCAGTGATCAGTATTTGGATGGACGCA
AAAAATTCCGCAGAAATCCATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028190XLOC_028190Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044571-exon-sc0005807-1575043694:3403..3485TCONS_00044571-exon-sc0005807-1575043694:3403..3485Clytia hemisphaericaexon
TCONS_00044571-exon-sc0005807-1575043694:2763..2911TCONS_00044571-exon-sc0005807-1575043694:2763..2911Clytia hemisphaericaexon
TCONS_00044571-exon-sc0005807-1510915933:3403..3485TCONS_00044571-exon-sc0005807-1510915933:3403..3485Clytia hemisphaericaexon
TCONS_00044571-exon-sc0005807-1510915933:2763..2911TCONS_00044571-exon-sc0005807-1510915933:2763..2911Clytia hemisphaericaexon
TCONS_00044571-exon-sc0005807-1491911889:3403..3485TCONS_00044571-exon-sc0005807-1491911889:3403..3485Clytia hemisphaericaexon
TCONS_00044571-exon-sc0005807-1491911889:2763..2911TCONS_00044571-exon-sc0005807-1491911889:2763..2911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005807supercontigsc0005807:2763..3485 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02296	0	0	1.13316	1.37952	0	0	1.23125	0	0	0	0	17.0084	9.18498	4.06608	4.36353	0	3.93552	10.8743	10.2412	0.989053	0	0	0	0	4.90105	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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