TCONS_00044570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044570
Unique NameTCONS_00044570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044570 ID=TCONS_00044570|Name=TCONS_00044570|organism=Clytia hemisphaerica|type=transcript|length=635bp
GATTCTGACAACTTTTGTGAATGAGTGACGATTGGGATCAATTAGATAGT
TCGAGAAAGCATAGTAATCTTTGACGACATCATTGACTTTTGAGACGTGT
GAATCGACTTCACCTGGNNNNNNNNGACTTGCTAGCGTCGCCAAAATCGA
TGGTTTCCAGGTCGAGAGAAATTGCATCTTCAGGAATGATAGCACGTTGA
TATTTGAGGTTGTTGATTTCCTTCATCAGGTCGAAGTGTGATTCCCACAA
TGGTCTTAGTTCATCTGGGATCTTGTCATCCCAGTCGAGTTTTCGGTGAA
CCAGTTCTTGTAGATCCAACTTCATAGCAGCAACGATTGGGGTGACTTTT
CCTGTAAGATCAAAAATTTCTGCTACTTTCGATGCGCAGTGTCTTCGAGT
TAGTTTGGCAGGAATGATGTTGACAGTGTTTGATGGCTTTTTACCACGAC
ATTTCTTCGCAAAGTTGAGTTGACTGATATTGAGTGATAACATATCGTCT
TTAGGAAACCATCGCATTCCGCCAACGTGAATCGTCTCTCCGTTGTCTGT
GAGATTCTCCAACGGTTTTTCTCCAGAAAAAGAAACACCTTTCAGTTGGA
ATCCTCCTTTGTTGATGTTGAGTTCGATGTCGTCT
Run BLAST on NCBI

protein sequence of TCONS_00044570-protein

>TCONS_00044570-protein ID=TCONS_00044570-protein|Name=TCONS_00044570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
DDIELNINKGGFQLKGVSFSGEKPLENLTDNGETIHVGGMRWFPKDDMLS
LNISQLNFAKKCRGKKPSNTVNIIPAKLTRRHCASKVAEIFDLTGKVTPI
VAAMKLDLQELVHRKLDWDDKIPDELRPLWESHFDLMKEINNLKYQRAII
PEDAISLDLETIDFGDASKXXXXR
Run BLAST on NCBI

transcript from alignment at sc0005803:1..635

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044570 ID=TCONS_00044570|Name=TCONS_00044570|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at sc0005803:1..635 (Clytia hemisphaerica)
AGACGACATCGAACTCAACATCAACAAAGGAGGATTCCAACTGAAAGGTG
TTTCTTTTTCTGGAGAAAAACCGTTGGAGAATCTCACAGACAACGGAGAG
ACGATTCACGTTGGCGGAATGCGATGGTTTCCTAAAGACGATATGTTATC
ACTCAATATCAGTCAACTCAACTTTGCGAAGAAATGTCGTGGTAAAAAGC
CATCAAACACTGTCAACATCATTCCTGCCAAACTAACTCGAAGACACTGC
GCATCGAAAGTAGCAGAAATTTTTGATCTTACAGGAAAAGTCACCCCAAT
CGTTGCTGCTATGAAGTTGGATCTACAAGAACTGGTTCACCGAAAACTCG
ACTGGGATGACAAGATCCCAGATGAACTAAGACCATTGTGGGAATCACAC
TTCGACCTGATGAAGGAAATCAACAACCTCAAATATCAACGTGCTATCAT
TCCTGAAGATGCAATTTCTCTCGACCTGGAAACCATCGATTTTGGCGACG
CTAGCAAGTCNNNNNNNNCCAGGTGAAGTCGATTCACACGTCTCAAAAGT
CAATGATGTCGTCAAAGATTACTATGCTTTCTCGAACTATCTAATTGATC
CCAATCGTCACTCATTCACAAAAGTTGTCAGAATC

Coding sequence (CDS) from alignment at sc0005803:1..635

>TCONS_00044570 ID=TCONS_00044570|Name=TCONS_00044570|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at sc0005803:1..635 (Clytia hemisphaerica)
GACGACATCGAACTCAACATCAACAAAGGAGGATTCCAACTGAAAGGTGT
TTCTTTTTCTGGAGAAAAACCGTTGGAGAATCTCACAGACAACGGAGAGA
CGATTCACGTTGGCGGAATGCGATGGTTTCCTAAAGACGATATGTTATCA
CTCAATATCAGTCAACTCAACTTTGCGAAGAAATGTCGTGGTAAAAAGCC
ATCAAACACTGTCAACATCATTCCTGCCAAACTAACTCGAAGACACTGCG
CATCGAAAGTAGCAGAAATTTTTGATCTTACAGGAAAAGTCACCCCAATC
GTTGCTGCTATGAAGTTGGATCTACAAGAACTGGTTCACCGAAAACTCGA
CTGGGATGACAAGATCCCAGATGAACTAAGACCATTGTGGGAATCACACT
TCGACCTGATGAAGGAAATCAACAACCTCAAATATCAACGTGCTATCATT
CCTGAAGATGCAATTTCTCTCGACCTGGAAACCATCGATTTTGGCGACGC
TAGCAAGTCNNNNNNNNCCAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028189XLOC_028189Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044570-proteinTCONS_00044570-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044570-exon-sc0005803-1491911889:1..635TCONS_00044570-exon-sc0005803-1491911889:1..635Clytia hemisphaericaexon
TCONS_00044570-exon-sc0005803-1510915933:1..635TCONS_00044570-exon-sc0005803-1510915933:1..635Clytia hemisphaericaexon
TCONS_00044570-exon-sc0005803-1575043694:1..635TCONS_00044570-exon-sc0005803-1575043694:1..635Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005803supercontigsc0005803:1..635 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61552	1.947	1.23194	0.418095	3.24744	2.51634	4.36226	2.61451	4.94039	6.84521	1.74207	4.1907	0.53338	0.0407223	0.0661985	0.416329	0.250075	0	0.730034	0.384686	0	0	0.127884	0.148721	0.409554	0.201001	0.472631	0	0	0.182626
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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